rs247878728 SNP Detail

Summary

• ID
  rs247878728
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151921674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTCTAAA GGCCCCAGCA
  CTCTCCATCA TTTGTGCTTA GGTTCCCTCC GCCCCCCTCA GCACTAAACA CCCCTTTGGA
  AGGATAGAAT TGACTTACAC AGTCCCTGGT CAGTGTTTAT TCACTGTCCT TGGCCATCAG
  CTCCAAGACA GTTAGGGACT AGGGGCACTT CCTATGCCAA TCAGCATCCT AATCCCTTTA
  Y
  AGGTGACAAC TCCTATAATG CTCTCAGCAA CACCTGAGCC AGCAGCAAGC ATTATTTCCA
  TTTATAAATG CAGAAACTGA GGCACACATT AGCTGGGCAA CTTGCCCAAG GTTCTACAGC
  TATATGGTAA GAGTGCTGGG AGACCCCAGT GCACATTGTT GGGAGTATGC TGTGTTATAG
  ATAGGCATTC CTTACCTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356144188	MGP_WTSI_2_151905490	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	C	C	C	T	C	T	C	T	T	C	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247878728					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	C	C	C	T	C	T	C	T	T	C	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356144188	MGP_WTSI_2_151905490	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151921674 () rs orientation: forward

Symbol	Name	Function Class
AA387200	expressed sequence AA387200	within coordinates
Cpgi12434	CpG island 12434	1068 bp proximal
Cpgi12435	CpG island 12435	1751 bp proximal
Gm75114	predicted gene, 75114	600 bp upstream
Rr567274	regulatory region 567274	110 bp proximal
Rr567275	regulatory region 567275	611 bp proximal
Rr567276	regulatory region 567276	1694 bp proximal
Rr567277	regulatory region 567277	1786 bp proximal
Tssr20749	transcription start site region 20749	1065 bp upstream
Tssr20750	transcription start site region 20750	1109 bp upstream
Tssr20751	transcription start site region 20751	1144 bp upstream
Tssr20752	transcription start site region 20752	1160 bp upstream
Tssr20753	transcription start site region 20753	1189 bp upstream
Tssr20754	transcription start site region 20754	1211 bp upstream
Tssr20755	transcription start site region 20755	1354 bp upstream
Tssr20756	transcription start site region 20756	1478 bp upstream
Tssr20757	transcription start site region 20757	1620 bp upstream
Tssr20758	transcription start site region 20758	1848 bp upstream
Tssr20759	transcription start site region 20759	1878 bp upstream