rs247882767 SNP Detail

Summary

• ID
  rs247882767
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:125951374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCCAGTCT GACAGTACAC
  AGAGGCAAAC TCTGAAAGGG ACCGTGTTCT GCCAAAACTT GAGATAGTGT TGGAAGCTGG
  GCAGATAACA AAATGCATAA GGCCCACCAG AAGATAAAGA TGTTTATTAC AGGTGGGGCT
  GAGGTGTTAA GCTCATGTGC CGGGTCACAG CACTCCCAGA GCCTGAAGCA GGTGGATCTC
  Y
  GAGTTTGAAG CCAGCCTGGT CTACAGAGCA AGTTCCAGGA CAGCCAGGAC AACACAGAGA
  AACCCTGTTT CAAAACAAAA CAAAAAGGTT CAAGTTGTAC TAGACAATTT TAAAAAGTTT
  GGCTCTTGGG AGGAAAGAAA AACGACTAGA AGGTGTGACG TGGAGGATGC CACAAGCAGG
  AAGGAAGACA TTGAAGGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363147572	MGP_WTSI_4_125734825	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247882767					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363147572	MGP_WTSI_4_125734825	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:125951374 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14805	CpG island 14805	468 bp proximal
Gm68683	predicted gene, 68683	within coordinates
Oscp1	organic solute carrier partner 1	984 bp upstream
Rr85182	regulatory region 85182	174 bp distal
Rr99993	regulatory region 99993	within coordinates
Rr398485	regulatory region 398485	811 bp upstream
Tssr1297	transcription start site region 1297	1049 bp upstream
Tssr38971	transcription start site region 38971	369 bp upstream
Tssr38972	transcription start site region 38972	976 bp upstream
Tssr38973	transcription start site region 38973	1034 bp upstream
Tssr38974	transcription start site region 38974	1070 bp upstream
Tssr43347	transcription start site region 43347	827 bp downstream