rs247887491 SNP Detail

Summary

• ID
  rs247887491
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:85428086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAAAGCTC TTGTTTCGAC
  GGGGAGGGGT GGGGTTGTCA GGTTGTGCCT ACTCACTGAC CCGGGAACCA GCATCCACCC
  GCTGCAGCCG TCTAGTCCCT GGATCTGGGC GGCCCAAACT CGCGGGGTCC CCAAGGTGAC
  CCGTGGCCCC CAGCCCGGGA AGCGCGCACG CTGGATTCCC GCCCCGCCCG CCTGTCCGTC
  R
  CCGCTCACCG TGGGCCGCGA CGCACGTGGG CAGCCAGAGC ACGAGACAGC ACCAGCCCGC
  GGCGCCACGG CTCATCTCCA GGGCCCGTCC CGCCGCCGCC GCCGCCGCCG TCCCGCCGCG
  ATCCCTCGCC CGACTTTAGC CTGACAGCTG CCACGGCCTC CCTCAGGCCC GCTCTCCGCG
  CCGGTTGGAG CACAGAACGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss369068641	MGP_WTSI_6_85401098	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs247887491					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369068641	MGP_WTSI_6_85401098	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85428086 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cct7	chaperonin containing TCP1 subunit 7			410 bp upstream
Cpgi17646	CpG island 17646			within coordinates
Pradc1	protease-associated domain containing 1			Intron
				Noncoding-Transcript-Variant
Rr633222	regulatory region 633222			937 bp distal
Rr633223	regulatory region 633223			within coordinates
Rr633224	regulatory region 633224			134 bp proximal
Rr633225	regulatory region 633225			421 bp proximal
Rr633226	regulatory region 633226			856 bp proximal
Rr633227	regulatory region 633227			999 bp proximal
Tssr57418	transcription start site region 57418			384 bp upstream
Tssr57419	transcription start site region 57419			879 bp upstream
Tssr57420	transcription start site region 57420			901 bp upstream
Tssr57421	transcription start site region 57421			937 bp upstream
Tssr61752	transcription start site region 61752			117 bp downstream
Tssr61753	transcription start site region 61753			725 bp downstream
Tssr61754	transcription start site region 61754			759 bp downstream
Tssr61755	transcription start site region 61755			851 bp downstream