rs247889820 SNP Detail

Summary

• ID
  rs247889820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106478721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTAGTGG AGCCGACCAG
  AGCGAGCCAG AGCGAGTGGG ATTGACTGGA GCAAGCAGAG GTCCTAAATT CAATTCCCAA
  CAACCACATG AAGGCTCACA ATCACCTGAA CAGCTACAGT GTAATCATAT ACATAAAATA
  AATAAATCTT TTTTTTTTAA TAAAAAGTTG CTAAAGTCAT AGTTTCTTCA AATTCACTAA
  Y
  CAGCTCTATT TTCTCTAGTG AAAATGCTGG CCTCCTTCCA ACGAGGTTGA GGCAAGGGAG
  GCAAGAGCCC AGCCTCAGGA TAAGTGAGGA AGAGTCCAAG GTCCAGACAT TCCGGAAAGC
  CTAGTCTACA GGGGACTCTG CTTTATCACA CAGGGCACCC CAGTTCAACC TGCACACTAG
  AAGCCAGGTG GGCCCCTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321246844	CHEV_4_106294129	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247889820					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106478721 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14527	CpG island 14527	859 bp proximal
Rr596780	regulatory region 596780	418 bp proximal
Tssr38185	transcription start site region 38185	900 bp upstream
Tssr38186	transcription start site region 38186	962 bp upstream
Tssr38187	transcription start site region 38187	1004 bp upstream
Ttc22	tetratricopeptide repeat domain 22	925 bp upstream