rs247898710 SNP Detail

Summary

• ID
  rs247898710
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90629025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGTCTGGTG GAGATGCCCG GAGACTGATA
  GAAGCTGACA GAACAGAGAC TGGACTCAGA GGCATGACTC TCCAACAAAA GGTGGCAGCA
  CCCCCCCCCC Aacacacaca cacacacaca cacacacaca cacacacaca cacacacGAC
  K
  TTCTCCTGCC AAGTCAAAGA TCAATGTGCT CTTTGGCGAA TTCCTACCTG ACCTCTGAGC
  AAAATACCTT AGCAAGGTGT GAGGCAAGGC TGCAGGTGGC AGTTAGTTGT GGGGATGGTT
  TTTAGAATCC ATGCTCAAAG TGACAAATGT                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325276375	CHEV_16_90832382	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247898710					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90629025 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8431	CpG island 8431	250 bp distal
Eva1c	eva-1 homolog C	within coordinates
Rr519213	regulatory region 519213	1014 bp distal
Rr519214	regulatory region 519214	1111 bp proximal
Tssr139314	transcription start site region 139314	1712 bp downstream
Tssr139315	transcription start site region 139315	1259 bp downstream
Tssr139316	transcription start site region 139316	987 bp downstream
Tssr139317	transcription start site region 139317	913 bp downstream
Tssr139318	transcription start site region 139318	634 bp upstream