rs247898965 SNP Detail

Summary

• ID
  rs247898965
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56961925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    attctagga tagtcagggc tgacagagaa
  accctgtctc ggaaaaaaaa aaGAAAAGAA AAAACAAGTC TTAAACAATG GAGTGGTATT
  ACAGATGAGG GAGACAATAT AATGAATGGA ACAGAGTCAG AGAAATACAT TGTGTCTGTA
  Y
  TGTATTTTTT TTTTAGTATT AAACTGTAAG GGGGAAGAAA TATTCAGAAA AATACATTAG
  AATAGTATTA GTAACTTAGG TTAAAAATGA TAAATTTCTC ATCGTACTGA AACATTGTAT
  TAAAAACAGG GGAGAGGGCA GATGTAGGAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322971277	CHEV_9_56902448	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247898965					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56961925 () rs orientation: forward

Symbol	Name	Function Class
Ptpn9	protein tyrosine phosphatase, non-receptor type 9	within coordinates
Rr195850	regulatory region 195850	1725 bp distal
Rr195851	regulatory region 195851	1476 bp proximal
Rr212037	regulatory region 212037	1560 bp proximal