rs247900020 SNP Detail

Summary

• ID
  rs247900020
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:78796537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCTACTC ATTGCGTTCT
  GCGGATAAAC AGTTCCTGCT TCCTTGTGAC CACTGCTAAA GAGTAGTGCG TTCTCAGAAC
  TTAGACGGAG ATTGTCCGGT GAACTTTGAA GCCTGTAAAT GCTTGGTAGA GCTACTTTCA
  ATGAATGCCG CTCGGAACGA TCCTTATTGT AAATTACGTA ACTGACTAAG GATAGCTCTC
  W
  CCTTCTGTCC AGCTGACTGA CACACAGTAA TGTGTGTGGA ATTTAGATTC GGCCGAAAAG
  TTTTCCATGA CACTTTACTC TAAAATGAAT GCAGCACCTA CGAGGGTTTT TACTTAGTGT
  GTTGTGTCTA ATTTAGAGTT TCAAGAGTTT AAATTCTGAA AGCCAGTGTA GCAAGAATTC
  TAAAGTTTTG ATTTAGCGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386596283	MGP_WTSI_12_79850750	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247900020					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386596283	MGP_WTSI_12_79850750	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:78796537 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4794	CpG island 4794	46 bp distal
Gm60106	predicted gene, 60106	183 bp upstream
Pals1	protein associated with LIN7 1, MAGUK family member	within coordinates
Rr403364	regulatory region 403364	907 bp downstream
Rr468462	regulatory region 468462	761 bp distal
Rr468463	regulatory region 468463	194 bp distal
Rr468464	regulatory region 468464	within coordinates
Tssr114060	transcription start site region 114060	843 bp downstream
Tssr114061	transcription start site region 114061	792 bp downstream
Tssr114062	transcription start site region 114062	744 bp downstream
Tssr114063	transcription start site region 114063	722 bp downstream
Tssr116791	transcription start site region 116791	163 bp upstream