rs247908591 SNP Detail

Summary

• ID
  rs247908591
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:116252918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTCTGGC TGTCCTAGAA
  CTCCCTGTGA AGACCAGGCT GGCCTTGAAC ACAGAGAGAT CCCTGTGTGC TACCACGCCC
  AGCTTTGTCA CACTTTTGAA GGCACAGAAA GCCCAGCAGC AGTGGAGTGA GCCAAGCTGC
  ATCCTAGCTC TGTCTGAGCA AACTGAACTG CAATAGTCAT CCTGCTGTGA CACCCAGAAC
  W
  TGGGGGCAAG GACAAAGGCA AGGGAAATCA ACCGCCTGGG CTGACTTTGT TAAAGGAAAA
  CAACATTTAA CCATGAACTG AAGAGTGTCC TTCAGGTCGT GTACGTTCTA CTGCACAGAG
  ATAAGGATAT GCCAAAGAGG AGGAGGAGGG GAAGGAGGAG GGGGAGGAGG AGGAGGAGGA
  GGGGGAGGAG GGGGAGGAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323488224	CHEV_10_115854069	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247908591					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116252918 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2214	CpG island 2214	1159 bp proximal
Gm67349	predicted gene, 67349	within coordinates
Kcnmb4	potassium large conductance calcium-activated channel, subfamily M, beta member 4	848 bp downstream
Kcnmb4os1	potassium large conductance calcium-activated channel, subfamily M, beta member 4, opposite strand 1	1108 bp upstream
Rr439316	regulatory region 439316	376 bp distal
Rr439317	regulatory region 439317	1135 bp proximal
Tssr95869	transcription start site region 95869	1035 bp upstream
Tssr95870	transcription start site region 95870	1104 bp upstream
Tssr95871	transcription start site region 95871	1126 bp upstream