rs247914304 SNP Detail

Summary

• ID
  rs247914304
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:123558244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACCGGAGA TAGGAGAGCG
  CCCAGCGCCG GCCGGGCAGC GGGGCTCCCG ACGCTTATCT CAACTCCACA GAAGCCAGCC
  CGGGAGAGGC GGCCGCGGCT CCCGGCCCAG CCCCGCACGG GTGGACGCGC CCCCCGCCCG
  CCCGCCTCCC CACCTGCAGC CGGCCGAGCC CCGGGCCTCC GGCTCCGGCC AGCGCCGGCC
  S
  GGCCGCAGCC TCACCTTTGT AGCGCTCCAG CACATCCTCG TACGCCTGCA CGAACTCCTT
  CTCCTGGCTG CGGTTGGCCG GCTGCTGACC CGGCACGTAG CCGGCCATGG CTGCCCGCGC
  CGCGCTCTGC CCGGGCCCCG GGGGGCGCCG GCTCCAGGCC CGCGCGCTGA AGCGGCGGCG
  GCGGCCCCAG TCTCGGCCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363089318	MGP_WTSI_4_123341694	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247914304					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363089318	MGP_WTSI_4_123341694	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:123558244 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14755	CpG island 14755	within coordinates
Gm12925	predicted gene 12925	1430 bp upstream
Macf1	microtubule-actin crosslinking factor 1	within coordinates
Rr99952	regulatory region 99952	within coordinates
Rr377112	regulatory region 377112	344 bp downstream
Rr377113	regulatory region 377113	1329 bp upstream
Tssr38865	transcription start site region 38865	357 bp upstream
Tssr43288	transcription start site region 43288	274 bp downstream
Tssr43289	transcription start site region 43289	1017 bp downstream
Tssr43290	transcription start site region 43290	1050 bp downstream