rs247917886 SNP Detail

Summary

• ID
  rs247917886
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:135500042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTAAAAA GCCTTTCAGG
  CAGTTCATGT GCCCGGTTTG CGGCACTCTC AAAAGCAGTC TTAACACACT GGCATGAAGA
  CCCTGACCAG TGCAGTATCA GCTTTCTCTG GCATCTTTAT TCTCTTTTTA ACCTTGGTGG
  AAAAGCTGAT CTGGCTTAGT GAATGTTTCT GTAGGTTTTG TCACAGACAG GCAGGCAGAC
  W
  CTGCAGAAAA ACCTTTTTCA AGGCTAACTT AAATCTGAAG CTTTGTGTTT GGCTAGAGAG
  TGGTCAGTAG CTCTCAGTCC ATCTCCCTTA AATTGGTAAA TTATTTTTTT CTTTCTCGTT
  TTGAGACAGG GTTCAGGTTG GTCTTGAACC GACTGTATAG TTTAGGCTGC TCTGTAAACT
  AACTGGGATT ACAGGCATGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355784480	MGP_WTSI_2_135483858	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247917886					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355784480	MGP_WTSI_2_135483858	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:135500042 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12321	CpG island 12321	383 bp proximal
Gm75609	predicted gene, 75609	1380 bp upstream
Plcb4	phospholipase C, beta 4	889 bp upstream
Rr38677	regulatory region 38677	1842 bp distal
Rr55690	regulatory region 55690	within coordinates
Tssr20369	transcription start site region 20369	1037 bp upstream
Tssr20370	transcription start site region 20370	1171 bp upstream
Tssr20371	transcription start site region 20371	1418 bp upstream
Tssr20372	transcription start site region 20372	1471 bp upstream
Tssr20373	transcription start site region 20373	1503 bp upstream
Tssr20374	transcription start site region 20374	1563 bp upstream