rs247935464 SNP Detail

Summary

• ID
  rs247935464
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75548161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTCCTGA GAAAGGAGGA
  GGTTTGTCCA AGGTCAACAC CAGCATTCTT TCTGCCGTTC CTAGGAGCTC CTTGTCATGT
  CCCACCTTCC TCAACTCAAA ATGCCGCTGC CCTGGATTCC ATGCAGTCGT TCAGTGTCTG
  CTGGGCCCTT TGTGCTCCTA TGGGCTGTGT GCATGGTCCA TATGTCCCAT AGGGTCTCTT
  W
  TCTGCATTCC AGCATCCTGC AACCCAGCCA TATGTCCGGA ACATGTTCTG TAGCCTGTGT
  CCAAAGTGTC CCTGCCTTCT ACATCCTGCA GGCAGGGTAG GAAACGAGAC TTTAACCTGC
  AGACTCTGAC AGCGTCTTGT GGCTGGTTCC TCACAGGCCC TGGGCAGTGA CGGGGTTCGA
  GTGACCATGG AGAGCGCCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383902947	MGP_WTSI_11_75470837	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247935464					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383902947	MGP_WTSI_11_75470837	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75548161 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3273	CpG island 3273	748 bp distal
Myo1c	myosin IC	within coordinates
Rr451247	regulatory region 451247	1452 bp distal
Rr451248	regulatory region 451248	within coordinates
Tssr103026	transcription start site region 103026	1560 bp downstream
Tssr103027	transcription start site region 103027	1479 bp downstream
Tssr103028	transcription start site region 103028	1417 bp downstream
Tssr103029	transcription start site region 103029	1398 bp downstream
Tssr103030	transcription start site region 103030	1335 bp downstream
Tssr103031	transcription start site region 103031	1298 bp downstream
Tssr103032	transcription start site region 103032	1158 bp downstream