rs247939676 SNP Detail

Summary

• ID
  rs247939676
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:149333924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTGT CTTTTTCATT GTTTCTCTCC
  Y
  ACCACCACTC CAGCAGGGTC AGATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325985058	CHEV_X_146985471	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247939676					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149333924 () rs orientation: forward

Symbol	Name	Function Class
Alas2	aminolevulinic acid synthase 2, erythroid	within coordinates
Apex2	apurinic/apyrimidinic endonuclease 2	within coordinates
Rr366711	regulatory region 366711	976 bp downstream
Rr694328	regulatory region 694328	165 bp distal
Tssr5699	transcription start site region 5699	1339 bp upstream
Tssr162305	transcription start site region 162305	12 bp upstream
Tssr162306	transcription start site region 162306	36 bp upstream
Tssr162307	transcription start site region 162307	1212 bp upstream