rs247956236 SNP Detail

Summary

• ID
  rs247956236
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:33597658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGAAAAGG GCTGCCTGGT GGGTGCAACC
  GGAGACGCTA GAGCCTAGAG CTTTTCTCTC TCCCCCCCCC CCCCCCCCGC TTTCAAAGTT
  CTCAGCCCCT GTAGAGCAAC TTTCCTTTAG TTGTGGGTTT CTTGGGGGGG GGGGGGATCT
  K
  TTTTGTCTTT TAAGTTCATG TAAAAATTGA TCTTTTCCTA GTAAAGTAAT AGCTAGAAAT
  GTTGCAACAA ACTGGTCGCG TTGCCAGGAC AGCAGGGTAT CATACTATGG TAACTGTCAG
  AGATTTCTTA GTGAAGATTA GTTCCTAATT                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325579801	CHEV_18_33624259	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247956236					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:33597658 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9808	CpG island 9808	105 bp distal
Gm10549	predicted gene 10549	within coordinates
Nrep	neuronal regeneration related protein	576 bp upstream
Rr352671	regulatory region 352671	within coordinates
Tssr152761	transcription start site region 152761	1162 bp upstream
Tssr152762	transcription start site region 152762	1132 bp upstream
Tssr152763	transcription start site region 152763	975 bp upstream
Tssr152764	transcription start site region 152764	947 bp upstream
Tssr152765	transcription start site region 152765	803 bp upstream
Tssr152766	transcription start site region 152766	749 bp upstream
Tssr152767	transcription start site region 152767	701 bp upstream
Tssr152768	transcription start site region 152768	541 bp upstream
Tssr152769	transcription start site region 152769	219 bp upstream