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rs247957802 SNP Detail
Summary
  • ID
    rs247957802
  • Variation Type
    SNP
  • Alleles
    C
Genome Location and Flanking Sequence
  • Location
    ChrX:9303741 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCCTCCCTTC AAATGACAGT
TGGATGAATA CCAGTAGAAT GGCCTGACTC TCCCTATTGG TTCATATCTT TCTCTCTACT
CCCAGGGGAA TCAGGATACT TTGGTGTGTA AAAGAAACAG AAGGGTAATT CTGTCTCTGG
CCATACATTC CATTATGATA TAGTTCTGAA TGTTTGCATC TATTTGTTCA ATCATTCATT
C
ATTCATTCAA TAAACTGACC TTGAACACCA ATTCTGCCAA ACACCATGGT AAATGTAGAG
TGCTACTTTA ACTCCAATCA GTCTAATATT TCTTACTAGG AATAATCTCT GACCCAGTTA
AACTGTTGTG CTGATAAAAC TGGAATATAC TTCTGTGCCG ATACTGTCAT TTAGGAAGTA
TTAAGTCACC ATCAGCATCA                                            

C = C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss403025279 MGP_WTSI_X_9014628 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs247957802 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss403025279 MGP_WTSI_X_9014628 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrX:9303741 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cybb cytochrome b-245, beta polypeptide within coordinates
Tssr160518 transcription start site region 160518 1501 bp downstream
Tssr160519 transcription start site region 160519 857 bp downstream
Tssr160520 transcription start site region 160520 793 bp downstream
Tssr160521 transcription start site region 160521 739 bp downstream
Tssr160522 transcription start site region 160522 622 bp downstream
Tssr162873 transcription start site region 162873 1854 bp upstream
Tssr162874 transcription start site region 162874 1598 bp upstream
Tssr162875 transcription start site region 162875 1575 bp upstream
Tssr162876 transcription start site region 162876 1419 bp upstream
Tssr162877 transcription start site region 162877 1400 bp upstream
Tssr162878 transcription start site region 162878 1348 bp upstream
Tssr162879 transcription start site region 162879 1242 bp upstream
Tssr162880 transcription start site region 162880 1156 bp upstream
Tssr162881 transcription start site region 162881 1138 bp upstream
Tssr162882 transcription start site region 162882 838 bp upstream
Tssr162883 transcription start site region 162883 448 bp upstream
Tssr162884 transcription start site region 162884 383 bp upstream
Tssr162885 transcription start site region 162885 347 bp upstream
Tssr162886 transcription start site region 162886 327 bp upstream
Tssr162887 transcription start site region 162887 289 bp upstream
Tssr162888 transcription start site region 162888 235 bp upstream
Tssr162889 transcription start site region 162889 217 bp upstream
Tssr162890 transcription start site region 162890 147 bp upstream
Tssr162891 transcription start site region 162891 119 bp upstream
Tssr162892 transcription start site region 162892 64 bp upstream
Tssr162893 transcription start site region 162893 33 bp downstream
Tssr162894 transcription start site region 162894 63 bp downstream
Tssr162895 transcription start site region 162895 123 bp downstream
Tssr162896 transcription start site region 162896 149 bp downstream
Tssr162897 transcription start site region 162897 176 bp downstream
Tssr162898 transcription start site region 162898 200 bp downstream
Tssr162899 transcription start site region 162899 346 bp downstream
Tssr162900 transcription start site region 162900 356 bp downstream
Tssr162901 transcription start site region 162901 387 bp downstream
Tssr162902 transcription start site region 162902 469 bp downstream
Tssr162903 transcription start site region 162903 530 bp downstream
Tssr162904 transcription start site region 162904 631 bp downstream
Tssr162905 transcription start site region 162905 715 bp downstream
Tssr162906 transcription start site region 162906 719 bp downstream
Tssr162907 transcription start site region 162907 792 bp downstream
Tssr162908 transcription start site region 162908 816 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory