rs247958643 SNP Detail

Summary

• ID
  rs247958643
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:16588688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATTAAGA AAGTTCCCTA
  ACACTGGATA ACAGATTTTT GGTTACTGTA ATACATTTAA GGATCATCTG TACGATTTCT
  GTGAGATTTG GTCCCTTTTA AATTGCTTAG TGCATTCATA CCTATTGGAT GGTCCATCTC
  CACTCAAGTA CTTCTAAGCT TTTTTGTGGC GGGGGGGGGG GGAAATAGGA GATAATAATG
  M
  AATCTGCTCA TACTGCAAAA TGTTGTACCT AAATAATTGC AAGGACTTCC AGACTTGGCC
  CCCACCCCCA CCCCTCAGCG CACGCGCCCA ACCAGACTCC CATTCCCACC CCCTACCCAG
  GTCTCCTAGT TCAATCGCCT TGACTGCCTC TGCGAAACTG GCCCGTCACT CTGCCCGGTC
  CCCCACCCTA CAGAGACCCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss348752864	MGP_WTSI_1_16508545	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs247958643					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss348752864	MGP_WTSI_1_16508545	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:16588688 () rs orientation: forward

Symbol	Name	Function Class
Cpgi55	CpG island 55	69 bp proximal
Rr28890	regulatory region 28890	within coordinates
Rr31746	regulatory region 31746	1888 bp distal
Stau2	staufen double-stranded RNA binding protein 2	within coordinates
Tssr11038	transcription start site region 11038	737 bp downstream
Tssr11039	transcription start site region 11039	820 bp downstream
Tssr11040	transcription start site region 11040	1559 bp downstream
Tssr11041	transcription start site region 11041	1603 bp downstream
Tssr11042	transcription start site region 11042	1642 bp downstream