rs247971006 SNP Detail

Summary

• ID
  rs247971006
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:156076483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTGTACT CCGTGTCGAA
  GCGTGGGTCG TGCTCCCGTT GCACATCCAC TGGTGCCAGC CAGGTGCCCA GCGATACGTC
  TTCACTGTGC CACGCGCGCA GGTACTCGCG GCTGAGGCGC AGGTAATGCA CCAGGTCCGC
  AGAAAGGACA TAGCCACCGC CCAACGCGTA GGGCAGGTAG TAGTCGCAGA GTTGCCAGGC
  Y
  GCTTCTCGCC AGCGACCTCC CGGCTTGACG CGCCCGCGCC CGGAAAAGAA GCCCCAGTAG
  AGGCGCCGGC GGCGTGCGGG CTCCCGTGCG CGTAGGTCCA CCAGGATAGC GTCCAGGCGC
  GCAAAGGAGT CGTCGTCCGC CTTGAGCACG AACTCGAAGT CCACGCGCTC ATCCAGCCAG
  GTCAGCATGG CCAGGACCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363809013	MGP_WTSI_4_155366135	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247971006					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363809013	MGP_WTSI_4_155366135	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156076483 () rs orientation: forward

Symbol	Name	Function Class
B3galt6	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	Coding-Synonymous
Cpgi15496	CpG island 15496	within coordinates
Rr377473	regulatory region 377473	191 bp upstream
Rr606628	regulatory region 606628	1497 bp distal
Rr606629	regulatory region 606629	664 bp distal
Rr606630	regulatory region 606630	548 bp proximal
Rr606631	regulatory region 606631	613 bp proximal
Rr606632	regulatory region 606632	624 bp proximal
Rr606633	regulatory region 606633	866 bp proximal
Rr606634	regulatory region 606634	1227 bp proximal
Rr606635	regulatory region 606635	1362 bp proximal
Sdf4	stromal cell derived factor 4	846 bp upstream
Tssr1404	transcription start site region 1404	913 bp upstream
Tssr40748	transcription start site region 40748	374 bp upstream
Tssr40749	transcription start site region 40749	1117 bp upstream
Tssr40750	transcription start site region 40750	1204 bp upstream
Tssr40751	transcription start site region 40751	1279 bp upstream
Tssr40752	transcription start site region 40752	1422 bp upstream
Tssr44987	transcription start site region 44987	305 bp downstream
Tssr44988	transcription start site region 44988	578 bp downstream