rs247973581 SNP Detail

Summary

• ID
  rs247973581
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142213694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTATCCC TAAAAATCGA
  GGTCCCATGT CATGTTTCCG GGGTGCCCTG TGCTTGTGCA ACATGGGCGC GTGGTGCGAA
  CCAACGTGCG TGGCACCCTA GGCCTCAGTG GTAGTGGCAG GACCTGTGCT CAGTTAGAGG
  GTTACAAGGT AGGCGCATCC CGGCCGACTG AGTTAAGGCG CAGGTAGCTG GGTAGAGGGT
  Y
  CTCACAGGGA CCTACTTGCT AAGCAGGGGA CAGTCCCCTG GATCGGCTGG GGGGGGGGGG
  GGGAGCGCGC AGCCTCCACC TGCCTGAGCA GGCAGGGCGG GCTGTGAGGC ACCTCGAATA
  GCAGCCAGAT AGATCTTACT AAGCGCCCCT AACCTCTGCT TTGCCTGGGA TCTCCTAGCA
  GCCTTTGGGG GGCCACCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373454624	MGP_WTSI_7_149845862	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247973581					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373454624	MGP_WTSI_7_149845862	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142213694 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19967	CpG island 19967	within coordinates
Cpgi19968	CpG island 19968	273 bp proximal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Igf2os	insulin-like growth factor 2, opposite strand	within coordinates
Rr658248	regulatory region 658248	1971 bp distal
Rr658249	regulatory region 658249	1132 bp distal
Rr658250	regulatory region 658250	479 bp distal
Rr658251	regulatory region 658251	605 bp distal
Rr658252	regulatory region 658252	254 bp distal
Rr658253	regulatory region 658253	415 bp distal
Rr658254	regulatory region 658254	within coordinates
Rr658255	regulatory region 658255	1338 bp proximal
Tssr2464	transcription start site region 2464	928 bp downstream
Tssr2465	transcription start site region 2465	1123 bp downstream
Tssr2466	transcription start site region 2466	1146 bp downstream
Tssr70241	transcription start site region 70241	1372 bp downstream
Tssr70242	transcription start site region 70242	1328 bp downstream
Tssr70243	transcription start site region 70243	1058 bp downstream
Tssr70244	transcription start site region 70244	1004 bp downstream
Tssr70245	transcription start site region 70245	925 bp downstream
Tssr70246	transcription start site region 70246	842 bp downstream
Tssr70247	transcription start site region 70247	779 bp downstream
Tssr70248	transcription start site region 70248	705 bp downstream
Tssr70249	transcription start site region 70249	377 bp upstream
Tssr70250	transcription start site region 70250	497 bp upstream
Tssr70251	transcription start site region 70251	523 bp upstream
Tssr70252	transcription start site region 70252	620 bp upstream
Tssr70253	transcription start site region 70253	666 bp upstream
Tssr70254	transcription start site region 70254	697 bp upstream
Tssr70255	transcription start site region 70255	774 bp upstream
Tssr75888	transcription start site region 75888	1190 bp upstream
Tssr75889	transcription start site region 75889	460 bp upstream
Tssr75890	transcription start site region 75890	907 bp downstream
Tssr75891	transcription start site region 75891	1020 bp downstream
Tssr75892	transcription start site region 75892	1032 bp downstream
Tssr75893	transcription start site region 75893	1086 bp downstream
Tssr75894	transcription start site region 75894	1231 bp downstream
Tssr75895	transcription start site region 75895	1269 bp downstream
Tssr75896	transcription start site region 75896	1297 bp downstream
Tssr75897	transcription start site region 75897	1316 bp downstream
Tssr75898	transcription start site region 75898	1348 bp downstream
Tssr75899	transcription start site region 75899	1886 bp downstream
Tssr75900	transcription start site region 75900	1901 bp downstream