rs247975734 SNP Detail

Summary

• ID
  rs247975734
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126772887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGATATTTG TAGTTAAGAT
  TTATGCTAAG AATCAAAAGC AAAGCCACTA CAAAAATATT TGGAAATCTT ATAGTTTGTT
  CAGAAAAGGG ACATGTTTAA AGTCGCAACC AAGGGAACCT ATTACCAACT TTCCAAACCT
  TAAAAACAAA ACAAACAAAC AACAACAAGA CTCTTATTCC TCAGCTGGCT AGGGATTTAG
  S
  TCAGTCGAGC ACTCGCCTAC CATTTATGAA GCCATTTGAG CACGGTGGTT CATGCCTACA
  ATCCCCACGC TACAGTCAGA CAGTCAGACT CACTGTTATT CTTGGGGAGC TCAAGGGCAG
  CCAGTTTCAG ACCCTGTTTG GGGGAGGCCA AGTACTTCAG GGACCATACC TAAAACAAGC
  TTGCTAAATA GGTCAGTGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320498559	CHEV_2_126756703	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247975734					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126772887 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12210	CpG island 12210			1800 bp proximal
Gm75308	predicted gene, 75308			1726 bp upstream
Rr564422	regulatory region 564422			1362 bp proximal
Sppl2a	signal peptide peptidase like 2A			Intron
				Noncoding-Transcript-Variant
Tssr19974	transcription start site region 19974			1937 bp downstream
Tssr26084	transcription start site region 26084			934 bp downstream