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rs247977499 SNP Detail
Summary
  • ID
    rs247977499
  • Variation Type
    SNP
  • Alleles
    T
Genome Location and Flanking Sequence
  • Location
    Chr3:72287575 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGGCTTTGTG TGGGTTCTCC
    AATCTTCAAC AGCTTGTTGA TTGGCTTTGT CAATTTTAAG TCTTGTTTAT GTGATACTAT
    GGCTACATAT TCCCTGACAT ATGTAGAGGC ACAACCTTTC AGCCGATACT ATAGCTCTTC
    CATTCTAACC TCTCTACAGA GAGGTCTTAG GAAATATATA GTCTCTGAAA CTTAGGTGTA
    T
    GGATGTATAG TATATATATA TATATATATT ACTTCAGGGT GTATATTTCT ACAATGGTGT
    TGATTTCTTT TGTGGATGTG ACAAAGTGAC TTATGATGAA TCCATGGATA TCAGGAATGC
    CTGTACTTAC CTGTGATAGC CATAGCCCTC TATGCTGCTT GTATGTGATG AGTGTGGCGC
    CATCTGTTGG AGCATAGAGA                                            
    
    T = T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CE/J
CZECHII/EiJ
DBA/1J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
RIIIS/J
SEA/GnJ
SJL/J
ST/bJ
SWR/J
ZALENDE/EiJ
ss358400470 MGP_WTSI_3_72184164 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CE/J
CZECHII/EiJ
DBA/1J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
RIIIS/J
SEA/GnJ
SJL/J
ST/bJ
SWR/J
ZALENDE/EiJ
rs247977499 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss358400470 MGP_WTSI_3_72184164 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:72287575 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr578287 regulatory region 578287 174 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory