rs247979903 SNP Detail

Summary

• ID
  rs247979903
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:16589466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCCCCAG GGCGGCCGAG
  GGCGGCGCGG GAGCGAGGCC GCGAGAGACG GCCCTGCTGG CTCCCGGCGC TCTGCCTCGG
  AACCCGCCGG CGGAAGTCAG GCCTGGCGGC GCCGCTCGCA CCAGGATTTA CCTGCGGGCC
  ACGGACGCCC GGCAGACGGC TCCACATGGG CGAGCGCTCC AGAGCTCCGC CGACGCCGCC
  Y
  GCTCCCTCCT CGGCTCCCGC CCCCCGCCTC CGCCTGCCGC CCTGCGCTCC CGCCGCGCCC
  TCCCGGGCCC GCGCCGCGCG CCCCCGCCTG CGCCGCCGCG CCCGCGCCAC GCCGCGCGCC
  CCCGCGCCAG CTCTCTCTCG CGCTCTCTCT CTCCAGCTCG CTCTGTCTCT CTGTCTCTCT
  CCCCTTTCTT TCTCTGTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ
ss348752881	MGP_WTSI_1_16509323	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	C	T	T	T	T	T	T	T	C	T	C	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ
rs247979903					SNP	T	T	C	T	T	T	T	T	T	T	C	T	C	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss348752881	MGP_WTSI_1_16509323	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:16589466 () rs orientation: forward

Symbol	Name	Function Class
Cpgi55	CpG island 55	within coordinates
Rr28890	regulatory region 28890	within coordinates
Stau2	staufen double-stranded RNA binding protein 2	within coordinates
Tssr11038	transcription start site region 11038	within coordinates
Tssr11039	transcription start site region 11039	42 bp downstream
Tssr11040	transcription start site region 11040	781 bp downstream
Tssr11041	transcription start site region 11041	825 bp downstream
Tssr11042	transcription start site region 11042	864 bp downstream