rs248001065 SNP Detail

Summary

• ID
  rs248001065
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78230481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGCTAGG GGACCTTCTG
  CTGGAAACCT TCCCATCTCC TCTGACCCTC CCTGCATCAG TAAGCCATAG CCCATGCTCC
  TCATTTCAAG AAGTCCCCCA GTTGACAAGC TCAGTCACCC CCCACCCAGG GTACTTGCTG
  CTGCTTAGGG CAGAACTTCC CCATATTGAA GACAGGGAGC GGACCCAGGG TTTCTTCCCA
  R
  GTTCCTGGCC TTTCTCACAG AGGGCATGGG AGACACTAGC TTCCTCCCTT AGCCTGCAGC
  TTGTGCCTCC CATCTAATGC TGCTTCTCCT TGTTGACCAA GTGATGCCCA CGCTGTGGAT
  AGTCCTCATC CTGGTCTTTC TCATCCTCAC CTTGCTCCTG ATCCTTCGCT TTGGCTGTGT
  CTCTGTATAC AGGTAAGTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	RF/J	RIIIS/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss394652005	MGP_WTSI_15_78176711	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	RF/J	RIIIS/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs248001065					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394652005	MGP_WTSI_15_78176711	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78230481 () rs orientation: forward

Symbol	Name	Function Class
Csf2rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	within coordinates
Tssr131930	transcription start site region 131930	1370 bp downstream
Tssr131931	transcription start site region 131931	786 bp downstream
Tssr131932	transcription start site region 131932	1786 bp upstream
Tssr131933	transcription start site region 131933	1870 bp upstream
Tssr131934	transcription start site region 131934	1934 bp upstream
Tssr131935	transcription start site region 131935	1999 bp upstream