rs248008471 SNP Detail

Summary

• ID
  rs248008471
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:98308693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGCTTTG CAGGAAAGGG
  AAGCTTGCTA CCCTTCCCTC ACTTGCCAAG GGTATTTATA GTGGCCTACT GTATACCCTG
  CACTTCCCAC CACAGCTCAG GGAAGGGGCA ACTGGGAACT CCCTATTCAG CCAGTGACTA
  GAGGGAAGAA AATTGCAGGA GTAGGTTTTT GAACCTTCTT GTGTTGAAGG CCACACCCCA
  Y
  CCTACACTCA GCCAGGTTCC TCCGTGGACA GACAGCCCTT TCAGAAGCAG TATAGCTAAG
  TTCTCAAGGG CTGTAGCTGA AGAGGGTTAA GGGTCACCAG GAGGACCACT CACTCTTACC
  TGCTTTATTC TTTGGGAAAC CATCAGACCA GAATCTGAGG CTGCTATTGG AATGCTGGAA
  AAAGTAACCA GTTGGCAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323129396	CHEV_9_98327059	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248008471					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:98308693 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22178	CpG island 22178	947 bp distal
Rbp1	retinol binding protein 1, cellular	within coordinates
Rr685258	regulatory region 685258	740 bp proximal
Rr685259	regulatory region 685259	1620 bp proximal
Tssr2984	transcription start site region 2984	1536 bp downstream
Tssr86646	transcription start site region 86646	1808 bp downstream
Tssr86647	transcription start site region 86647	1735 bp downstream
Tssr86648	transcription start site region 86648	1705 bp downstream
Tssr86649	transcription start site region 86649	1670 bp downstream
Tssr86650	transcription start site region 86650	1310 bp downstream
Tssr86651	transcription start site region 86651	1127 bp downstream