rs248009251 SNP Detail

Summary

• ID
  rs248009251
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:98887090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGCCTCT GGGTTCCTTG
  AGGGTTGTCC CGGACCACCA TGGGCTCAGA GATGGAGCCA CTGCTCCGGG CCTGGAGCTA
  TTTTAGACGC AGGAAGTTCC AGCTCTGCGC CGATCTATGC ACGCAGATGC TGGAGAAATC
  CCCTTATGAT CAGGTACCTG GCCGGCCCCA GGCAGTCTGT GGATCCTCTT TGCTGAGGCC
  R
  TGGGCTCAGG GCGGGATCCC TCTGTCCCCT GAGGGAGGCC CGGGAGGAGG GCCCAAGAAG
  AAGTTGCCTG TGTAATCCGC AAAGGCACCT GGAGCGAGAC TCTTTGGAAT CCTGGACAGT
  AGGTCCCTGC CTTTTGCATC CCCTGGGAAT CCTGAGTCCT GTGCTTTGAC AGCTCCTGCT
  ATAAACTTCA GCACACCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324133996	CHEV_12_100159041	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248009251					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:98887090 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4974	CpG island 4974	112 bp distal
Rr403444	regulatory region 403444	313 bp downstream
Rr470976	regulatory region 470976	209 bp distal
Rr470977	regulatory region 470977	400 bp distal
Rr470978	regulatory region 470978	945 bp proximal
Tssr114655	transcription start site region 114655	278 bp downstream
Tssr114656	transcription start site region 114656	212 bp downstream
Tssr114657	transcription start site region 114657	197 bp downstream
Tssr114658	transcription start site region 114658	169 bp downstream
Ttc8	tetratricopeptide repeat domain 8	within coordinates