rs248051406 SNP Detail

Summary

• ID
  rs248051406
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166900606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGTTTCC TTGTTGGAAA
  ATGAAAACTG AAACCTGAAA CTCAACTCTG ATTCAGGAAA CTTAAAATCG AAACTAATTA
  TCCCCCCCCC CCTTACAACT GCTTGTCTTA CACAGGGACC CTGGGACCCA GGGAGGCAGC
  CATCACTTTC CTTCCCTCTA CAGGGATTCT ACAGCTGGCC TTAGCAGAAT GCTGTGATTT
  R
  CAATTTGTGA TTCACAATTT GACAATAAAA CTTAGGAAAG CTACTTCAGA TTTTTTTTTA
  AAGATTTATT TTTTCTTGGA TATTTTCCTT ATTTACATTT CAAATGTTTT CCCCTTTCCA
  GACCTCCCCT TTGGAAACCC CGTCTCATTC ATCCTCCTTA ACACTTAAGA TTTAAGATGA
  CAGACTGGCC AGGCAGTGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356497076	MGP_WTSI_2_166884186	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248051406					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356497076	MGP_WTSI_2_166884186	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166900606 () rs orientation: forward

Symbol	Name	Function Class
Gm75600	predicted gene, 75600	1866 bp upstream
Rr570435	regulatory region 570435	within coordinates
Rr570436	regulatory region 570436	736 bp proximal
Rr570437	regulatory region 570437	1740 bp proximal
Rr570438	regulatory region 570438	1877 bp proximal
Tssr21784	transcription start site region 21784	1822 bp downstream
Tssr21785	transcription start site region 21785	194 bp upstream
Tssr21786	transcription start site region 21786	1830 bp upstream
Tssr27727	transcription start site region 27727	1914 bp upstream
Tssr27728	transcription start site region 27728	1875 bp upstream
Tssr27729	transcription start site region 27729	1859 bp upstream
Tssr27730	transcription start site region 27730	1743 bp upstream
Tssr27731	transcription start site region 27731	1368 bp downstream
Tssr27732	transcription start site region 27732	1416 bp downstream
Tssr27733	transcription start site region 27733	1452 bp downstream
Tssr27734	transcription start site region 27734	1731 bp downstream
Tssr27735	transcription start site region 27735	1761 bp downstream
Znfx1	zinc finger, NFX1-type containing 1	within coordinates