rs248051895 SNP Detail

Summary

• ID
  rs248051895
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115221333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCTAGCG GCCTCTCGCC
  GAAGGAAGAA GGGGAGCTCG AAGACGGGGA GATCAGCGAC GACGACAACA GCCGGAGCCG
  GAGCAGCAGC AGCAGCAGCA GCGGCGGCGG GCTGTTACCG TACCCGCGGC GGCGGCCTCC
  TCCCCCGGCC CGGGGCGGTG GATCCGGGGG AGGCGGCGGC GGCTCCTCGT CCTCCTCGTC
  R
  TCCTCCCAGC AGCAGCTGAG GAATTTCTCA CGCTCACGGC ACCCGGCCGA GCGGGGCCAG
  CTCAGGGGAC CCAGCAGCTA CCGACCCAAA GAACCGTTCC GGACTCACCC GCCCCCAGGG
  CGGATGCCGT CGGGGTCCCT GTCGGAAAGC AGCCCCCGGC CGTCCTTCTG GGAGCGGAGC
  CACATCGCCC TGGACCGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381866149	MGP_WTSI_10_114822484	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248051895					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381866149	MGP_WTSI_10_114822484	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115221333 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2206	CpG island 2206	within coordinates
Rr402239	regulatory region 402239	399 bp downstream
Rr439213	regulatory region 439213	1029 bp distal
Rr439214	regulatory region 439214	1114 bp distal
Rr439215	regulatory region 439215	459 bp distal
Rr439216	regulatory region 439216	448 bp distal
Rr439217	regulatory region 439217	185 bp distal
Thap2	THAP domain containing, apoptosis associated protein 2	993 bp upstream
Tssr95813	transcription start site region 95813	1478 bp downstream
Tssr95814	transcription start site region 95814	479 bp downstream
Tssr95815	transcription start site region 95815	407 bp downstream
Tssr95816	transcription start site region 95816	371 bp downstream
Tssr99330	transcription start site region 99330	1092 bp upstream
Tssr99331	transcription start site region 99331	1053 bp upstream
Tssr99332	transcription start site region 99332	993 bp upstream
Tssr99333	transcription start site region 99333	919 bp upstream
Tssr99334	transcription start site region 99334	866 bp upstream
Tssr99335	transcription start site region 99335	632 bp upstream
Zfc3h1	zinc finger, C3H1-type containing	within coordinates