rs248058733 SNP Detail

Summary

• ID
  rs248058733
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:46811671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTATGGTG GGAACTTGCT
  GTCACATGGC CATTTTGAAG TTATGGTGGT ACCTTTCTGC TGTGCAGGAA TTTGGTTGCT
  TTACTTTCAT AGGCCCCGTG AACTTTACAT GTTTGAAATC AAATGCAGAA AGAATGGGGC
  TAAATAACCC ATTAGGGAAA GCCCTGGCTA TAAATGGAGC ACAAAGGATA AAATGTGAAA
  Y
  AGTAAAATAG TACCGAAGGG AAGGCGTGAA GACTAGTTTA AAAAGTTGTT TCTCATGCGA
  AACAGTGACT ACACGCTCTT CGTTAAAATC CAAAAGATCC ATTTGTGTGA GTGAACTACA
  TCAAGAAAAG TCTCAGGGCC AGCAAGGTGA TTGAGCAAGT AAAGACACTG CACCAAGCCC
  AATGACAAGA GCTAGGTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ
ss390989137	MGP_WTSI_14_47193889	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	C	T	C	T	T	T	T	T	T	T	C	C	C	T	T	C	C	T	C	C	T	T	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ
rs248058733					SNP	T	T	C	T	C	T	T	T	T	T	T	T	C	C	C	T	T	C	C	T	C	C	T	T	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390989137	MGP_WTSI_14_47193889	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:46811671 () rs orientation: forward

Symbol	Name	Function Class
Gm49319	predicted gene, 49319	within coordinates
Rr491231	regulatory region 491231	945 bp distal
Rr491232	regulatory region 491232	252 bp distal
Rr491233	regulatory region 491233	1197 bp proximal
Rr491234	regulatory region 491234	1623 bp proximal
Rubie	RNA upstream of Bmp4 expressed in inner ear	within coordinates
Tssr128285	transcription start site region 128285	1635 bp downstream