rs248059377 SNP Detail

Summary

• ID
  rs248059377
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102281942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGGGAAT CGCGGCTCGG
  GCGCGGGGCC GCCACTCTGG ATCGGATGCG GAGGGAGTCG ATCTTCGGGC GGCCGGGAGG
  CTGGCAGCTC GGTCCGCGGT GGCAGGAGTC CTCCCCACAG CGTCAGCAGC GAGCTCAAAG
  CCAGCAGCCA GAGCCCCGCG GCGGCGGCGG CGCCCCGCAT CTTCCTCCCC ATGCTCCTGC
  M
  GGCGCGCCGG TGCCACCGCC GCCGCTTCAA GCCAAGCCCG GGCGCCCGGG TGCGGGCGGC
  GAGGCGGGCC CGGCTGCTAG CTGGCTCCGG GGCTTCGGGT GCCGGAGCCC CATCGCGGCC
  GCGGAGCGCT GCGGGGCTCT GGCCAGCGCT CTGCCCCGGC GCTGGGAACT CGCCTCCCCG
  TGGCTTCCCA GCAGCTTTTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355069592	MGP_WTSI_2_102291754	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248059377					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355069592	MGP_WTSI_2_102291754	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102281942 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11976	CpG island 11976	within coordinates
Fjx1	four jointed box 1	mRNA-UTR
Rr561694	regulatory region 561694	837 bp distal
Rr561695	regulatory region 561695	253 bp distal
Rr561696	regulatory region 561696	892 bp proximal
Rr561697	regulatory region 561697	1846 bp proximal
Rr561698	regulatory region 561698	1973 bp proximal
Tssr25397	transcription start site region 25397	163 bp downstream
Tssr25398	transcription start site region 25398	200 bp downstream
Tssr25399	transcription start site region 25399	229 bp downstream