rs248060587 SNP Detail

Summary

• ID
  rs248060587
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30827548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATGTGTG AGACCATACA
  CCAATTCCGA GGCATACATA TGAAGGTCAG AGGGCAACTT GGGGGGGGGG GAGTGAGTCC
  TATATGTTTA ACTTTGGAGA CAGGATCTCA CTATGTAGAC CATGCTGACT TCTAACTGGT
  GGTCTCCTGC TTCAGTATGT ACCACCACAC CACGTTCGTA TTCTTTTATA TGATTTGTCT
  R
  TTTGTTGTGT GTACCTCACC CCCTGGGTGA GGGCACTGAC CTGTGTCCCA AACAGGTCCC
  TAGCACCTTA ACTTCTGCTA GGATCGTTAA AGGGCCACCA GGACCAAGGT GGGAGAGAGA
  CTCTTGGCAG GGGTTGGCTG GCCCTGTCCT AGCTTCCAGT TCAGCATGAA ATAAAGCCCC
  AGTGAAGCCC CAGTGTGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370923241	MGP_WTSI_7_31913142	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248060587					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370923241	MGP_WTSI_7_31913142	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30827548 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18837	CpG island 18837	478 bp distal
Rr645025	regulatory region 645025	1290 bp distal
Rr645026	regulatory region 645026	630 bp distal
Rr645027	regulatory region 645027	371 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	1120 bp upstream
Tssr71935	transcription start site region 71935	1398 bp upstream
Tssr71936	transcription start site region 71936	1351 bp upstream
Tssr71937	transcription start site region 71937	1189 bp upstream
Tssr71938	transcription start site region 71938	1131 bp upstream
Tssr71939	transcription start site region 71939	1081 bp upstream
Tssr71940	transcription start site region 71940	946 bp upstream