rs248081537 SNP Detail

Summary

• ID
  rs248081537
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142208053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCGCATAT CCCCAGCCCC
  ACTAGAGTCA CCCCACCTCA GGGCAACTTC CCTGAAATAT CTATGTTAAT GAGCAGAGGC
  TGACAGTAAA ATGTGTGAGG GGGGCTTCGT GGTACCCCAA ATCAAGAAGT GAGTGGTCTC
  TTTGTCTCAC CCCATAATTC CTTCAACCCC ACCTCGCTAC CTACCGGAAG TACGGCCTGA
  R
  AGGTAGACAC GTCCCTCTCG GACTTGGCGG GGGTGGCACA GTATGTCTCC AGGAGGGCCA
  GGTCGCAGCT GCGGAAGCAG CACTCTTCCA CGATGCCACG GCTGCGACGG TTGGCACGGC
  TTGAAGGCCT GCCTGGAAGT TCCACAGGAC AGACAACTTC AGTTAGTGTC TACTGGGGTC
  AGCACCCATT GGGGTGGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373454567	MGP_WTSI_7_149840221	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248081537					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373454567	MGP_WTSI_7_149840221	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142208053 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19966	CpG island 19966	within coordinates
D7Mit46	DNA segment, Chr 7, Massachusetts Institute of Technology 46	1221 bp distal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Mir483	microRNA 483	608 bp downstream
Rr167001	regulatory region 167001	within coordinates
Tssr2462	transcription start site region 2462	1259 bp downstream
Tssr2463	transcription start site region 2463	463 bp upstream
Tssr70229	transcription start site region 70229	1299 bp downstream
Tssr70230	transcription start site region 70230	1206 bp downstream
Tssr70231	transcription start site region 70231	751 bp downstream
Tssr70232	transcription start site region 70232	698 bp downstream
Tssr70233	transcription start site region 70233	655 bp downstream
Tssr70234	transcription start site region 70234	617 bp downstream
Tssr70235	transcription start site region 70235	594 bp downstream
Tssr70236	transcription start site region 70236	572 bp downstream
Tssr70237	transcription start site region 70237	471 bp downstream
Tssr70238	transcription start site region 70238	441 bp downstream
Tssr70239	transcription start site region 70239	311 bp downstream
Tssr70240	transcription start site region 70240	within coordinates
Tssr75858	transcription start site region 75858	1998 bp upstream
Tssr75859	transcription start site region 75859	1942 bp upstream
Tssr75860	transcription start site region 75860	1887 bp upstream
Tssr75861	transcription start site region 75861	1855 bp upstream
Tssr75862	transcription start site region 75862	1308 bp upstream
Tssr75863	transcription start site region 75863	1277 bp upstream
Tssr75864	transcription start site region 75864	1248 bp upstream
Tssr75865	transcription start site region 75865	1215 bp upstream
Tssr75866	transcription start site region 75866	1168 bp upstream
Tssr75867	transcription start site region 75867	1135 bp upstream
Tssr75868	transcription start site region 75868	1116 bp upstream
Tssr75869	transcription start site region 75869	1094 bp upstream
Tssr75870	transcription start site region 75870	1081 bp upstream
Tssr75871	transcription start site region 75871	1037 bp upstream
Tssr75872	transcription start site region 75872	629 bp upstream
Tssr75873	transcription start site region 75873	617 bp upstream
Tssr75874	transcription start site region 75874	407 bp upstream
Tssr75875	transcription start site region 75875	370 bp upstream
Tssr75876	transcription start site region 75876	322 bp upstream
Tssr75877	transcription start site region 75877	263 bp upstream
Tssr75878	transcription start site region 75878	2 bp downstream
Tssr75879	transcription start site region 75879	24 bp downstream
Tssr75880	transcription start site region 75880	74 bp downstream
Tssr75881	transcription start site region 75881	1368 bp downstream
Tssr75882	transcription start site region 75882	1409 bp downstream
Tssr75883	transcription start site region 75883	1720 bp downstream
Tssr75884	transcription start site region 75884	1758 bp downstream
Tssr75885	transcription start site region 75885	1805 bp downstream
Tssr75886	transcription start site region 75886	1863 bp downstream