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rs248111606 SNP Detail
Summary
  • ID
    rs248111606
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44129461 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACCTCCCCAT TCCACCTCTT
CCACTCTCTG TCCTCCCACT TCCTTCTTCC TTTACTGGTC CCTCTCTTTT CCCCTTACAT
TCTTCCTCTT CCTTCTTTTC ATCCTCATCT TCCCATCACT GTCTCCTTTC TAGCTTTCTC
CTCCTCCTCC TCCTCCTCCT CCTCCTCCTC CTCCTCTTCC TCCTTCTCTG GCTCTGTCTC
Y
CCTTCCTTGC CCTCTCTCTT TCTCTTCTTT TTCTCCTCCC TGTCCTCTCC CTCTTGCTAT
TCTTCCTTTC CTTCCTCTGC CTCTTCAGTT TCCTCTTTTT ATTCCTTGAC ACCTTGCCAT
ATTCTAAAAT CCTCATCCTC TTTCTTTGTT GTCTTCTTCT TGAGATCTCT TTCACCCTTC
CTTCTCCTAC TTCTCTGGTG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ss371156130 MGP_WTSI_7_51735407 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
rs248111606 SNP C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156130 MGP_WTSI_7_51735407 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44129461 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2227 transcription start site region 2227 1017 bp downstream
Tssr2228 transcription start site region 2228 41 bp upstream
Tssr2229 transcription start site region 2229 317 bp upstream
Tssr2230 transcription start site region 2230 496 bp upstream
Tssr2231 transcription start site region 2231 629 bp upstream
Tssr2232 transcription start site region 2232 804 bp upstream
Tssr2233 transcription start site region 2233 837 bp upstream
Tssr2234 transcription start site region 2234 996 bp upstream
Tssr2235 transcription start site region 2235 1630 bp upstream
Tssr66261 transcription start site region 66261 1993 bp downstream
Tssr66262 transcription start site region 66262 1986 bp downstream
Tssr66263 transcription start site region 66263 1974 bp downstream
Tssr66264 transcription start site region 66264 1950 bp downstream
Tssr66265 transcription start site region 66265 1907 bp downstream
Tssr66266 transcription start site region 66266 1890 bp downstream
Tssr66267 transcription start site region 66267 1853 bp downstream
Tssr66268 transcription start site region 66268 1837 bp downstream
Tssr66269 transcription start site region 66269 1801 bp downstream
Tssr66270 transcription start site region 66270 1766 bp downstream
Tssr66271 transcription start site region 66271 1734 bp downstream
Tssr66272 transcription start site region 66272 1682 bp downstream
Tssr66273 transcription start site region 66273 1664 bp downstream
Tssr66274 transcription start site region 66274 1659 bp downstream
Tssr66275 transcription start site region 66275 1639 bp downstream
Tssr66276 transcription start site region 66276 1619 bp downstream
Tssr66277 transcription start site region 66277 1599 bp downstream
Tssr66278 transcription start site region 66278 1555 bp downstream
Tssr66279 transcription start site region 66279 1510 bp downstream
Tssr66280 transcription start site region 66280 1488 bp downstream
Tssr66281 transcription start site region 66281 1448 bp downstream
Tssr66282 transcription start site region 66282 1431 bp downstream
Tssr66283 transcription start site region 66283 1417 bp downstream
Tssr66284 transcription start site region 66284 1405 bp downstream
Tssr66285 transcription start site region 66285 1391 bp downstream
Tssr66286 transcription start site region 66286 1352 bp downstream
Tssr66287 transcription start site region 66287 1316 bp downstream
Tssr66288 transcription start site region 66288 1291 bp downstream
Tssr66289 transcription start site region 66289 1209 bp downstream
Tssr66290 transcription start site region 66290 1171 bp downstream
Tssr66291 transcription start site region 66291 1145 bp downstream
Tssr66292 transcription start site region 66292 1113 bp downstream
Tssr66293 transcription start site region 66293 1091 bp downstream
Tssr66294 transcription start site region 66294 1067 bp downstream
Tssr66295 transcription start site region 66295 802 bp downstream
Tssr66296 transcription start site region 66296 631 bp downstream
Tssr66297 transcription start site region 66297 607 bp downstream
Tssr66298 transcription start site region 66298 552 bp downstream
Tssr66299 transcription start site region 66299 532 bp downstream
Tssr66300 transcription start site region 66300 509 bp downstream
Tssr66301 transcription start site region 66301 493 bp downstream
Tssr66302 transcription start site region 66302 452 bp downstream
Tssr66303 transcription start site region 66303 443 bp downstream
Tssr66304 transcription start site region 66304 438 bp downstream
Tssr66305 transcription start site region 66305 399 bp downstream
Tssr66306 transcription start site region 66306 345 bp downstream
Tssr66307 transcription start site region 66307 296 bp downstream
Tssr66308 transcription start site region 66308 279 bp downstream
Tssr66309 transcription start site region 66309 229 bp downstream
Tssr66310 transcription start site region 66310 160 bp downstream
Tssr66311 transcription start site region 66311 137 bp downstream
Tssr66312 transcription start site region 66312 118 bp downstream
Tssr66313 transcription start site region 66313 108 bp downstream
Tssr66314 transcription start site region 66314 90 bp downstream
Tssr66315 transcription start site region 66315 83 bp downstream
Tssr66316 transcription start site region 66316 18 bp downstream
Tssr66317 transcription start site region 66317 2 bp downstream
Tssr66318 transcription start site region 66318 30 bp upstream
Tssr66319 transcription start site region 66319 53 bp upstream
Tssr66320 transcription start site region 66320 80 bp upstream
Tssr66321 transcription start site region 66321 98 bp upstream
Tssr66322 transcription start site region 66322 118 bp upstream
Tssr66323 transcription start site region 66323 164 bp upstream
Tssr66324 transcription start site region 66324 193 bp upstream
Tssr66325 transcription start site region 66325 223 bp upstream
Tssr66326 transcription start site region 66326 264 bp upstream
Tssr66327 transcription start site region 66327 278 bp upstream
Tssr66328 transcription start site region 66328 294 bp upstream
Tssr66329 transcription start site region 66329 333 bp upstream
Tssr66330 transcription start site region 66330 352 bp upstream
Tssr66331 transcription start site region 66331 366 bp upstream
Tssr66332 transcription start site region 66332 387 bp upstream
Tssr66333 transcription start site region 66333 435 bp upstream
Tssr66334 transcription start site region 66334 447 bp upstream
Tssr66335 transcription start site region 66335 456 bp upstream
Tssr66336 transcription start site region 66336 465 bp upstream
Tssr66337 transcription start site region 66337 483 bp upstream
Tssr66338 transcription start site region 66338 539 bp upstream
Tssr66339 transcription start site region 66339 590 bp upstream
Tssr66340 transcription start site region 66340 635 bp upstream
Tssr66341 transcription start site region 66341 680 bp upstream
Tssr66342 transcription start site region 66342 742 bp upstream
Tssr66343 transcription start site region 66343 774 bp upstream
Tssr66344 transcription start site region 66344 919 bp upstream
Tssr66345 transcription start site region 66345 952 bp upstream
Tssr66346 transcription start site region 66346 1008 bp upstream
Tssr66347 transcription start site region 66347 1046 bp upstream
Tssr66348 transcription start site region 66348 1087 bp upstream
Tssr66349 transcription start site region 66349 1111 bp upstream
Tssr66350 transcription start site region 66350 1139 bp upstream
Tssr66351 transcription start site region 66351 1147 bp upstream
Tssr66352 transcription start site region 66352 1183 bp upstream
Tssr66353 transcription start site region 66353 1257 bp upstream
Tssr66354 transcription start site region 66354 1271 bp upstream
Tssr66355 transcription start site region 66355 1298 bp upstream
Tssr66356 transcription start site region 66356 1315 bp upstream
Tssr66357 transcription start site region 66357 1329 bp upstream
Tssr66358 transcription start site region 66358 1341 bp upstream
Tssr66359 transcription start site region 66359 1367 bp upstream
Tssr66360 transcription start site region 66360 1379 bp upstream
Tssr66361 transcription start site region 66361 1405 bp upstream
Tssr66362 transcription start site region 66362 1437 bp upstream
Tssr66363 transcription start site region 66363 1454 bp upstream
Tssr66364 transcription start site region 66364 1487 bp upstream
Tssr66365 transcription start site region 66365 1507 bp upstream
Tssr66366 transcription start site region 66366 1527 bp upstream
Tssr66367 transcription start site region 66367 1555 bp upstream
Tssr66368 transcription start site region 66368 1577 bp upstream
Tssr66369 transcription start site region 66369 1611 bp upstream
Tssr66370 transcription start site region 66370 1653 bp upstream
Tssr72200 transcription start site region 72200 1596 bp upstream
Tssr72201 transcription start site region 72201 1086 bp upstream
Tssr72202 transcription start site region 72202 229 bp upstream
Tssr72203 transcription start site region 72203 142 bp downstream
Tssr72204 transcription start site region 72204 738 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory