rs248117228 SNP Detail

Summary

• ID
  rs248117228
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:90652867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ctggtctgg aattacaggt gtgtacagaa
  tatctggttt gttgccggtc ctgggatctg aactctggtc cttatgatct caaagcaagc
  actcaacagc aaagccatct ctctattccA Tccttgaact tctgaccctc ctgcctcttc
  W
  gctgggatta taggcatgta tcaccaagca gggtttatct gatgctagag attgagttta
  ggcctcatgc atgctaggca aaggacacct actcaactgT TTTAATTACT GTTCCATGAT
  GAAAGCAGCT TAGAAAAGAA AGGATTgggg                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320391271	CHEV_2_90662680	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248117228					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90652867 () rs orientation: forward

Symbol	Name	Function Class
Agbl2	ATP/GTP binding protein-like 2	within coordinates
Rr373531	regulatory region 373531	99 bp upstream
Rr560574	regulatory region 560574	631 bp proximal
Rr560575	regulatory region 560575	1252 bp proximal