rs248119322 SNP Detail

Summary

• ID
  rs248119322
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:84563520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGGAGGAAC GCAAAACAGT CCGGAGCAGA
  GAATTAGGGA TTGGAGGGTT GGGTACTTCA AGACCTGGTG CCTCTGGCTA GGACAGATCT
  TCTCTCACCA GATAAGCTGT AGTGGGATCC ATGAACAACT TCTTGGTATC CACACTGCCT
  S
  TCTCTCTCAA CACTATCCCA CCTTCCCGCC TTCCTCTACC TTTGCTTTAG AGTGTTAATG
  ACCCCCCCCC CCAGATGGAA GGGCATCCAT CCTTTTCTGC CTTTCACAAC CCCCTTCCTC
  AAAAATTAAA GTTCTTGTTA AACAGCTTGT                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321595491	CHEV_5_84844686	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248119322					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:84563520 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16022	CpG island 16022	435 bp proximal
Cpgi16023	CpG island 16023	1221 bp proximal
Epha5	Eph receptor A5	within coordinates
Gm42163	predicted gene, 42163	1077 bp upstream
Gm71976	predicted gene, 71976	1795 bp upstream
Tssr51507	transcription start site region 51507	1451 bp downstream
Tssr51508	transcription start site region 51508	1482 bp downstream
Tssr51509	transcription start site region 51509	1637 bp downstream
Tssr51510	transcription start site region 51510	1663 bp downstream
Tssr51511	transcription start site region 51511	1707 bp downstream
Tssr51512	transcription start site region 51512	1734 bp downstream
Tssr51513	transcription start site region 51513	1817 bp downstream