rs248121708 SNP Detail

Summary

• ID
  rs248121708
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:109722422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACATAACC GCCCCGCCGC
  ACCCCGCTCG CTGTCCTGCG CCGCCACTCA AAAAAAAAAA AAAAGTTGGC AGCCCCCCTT
  TTTGGCTCTG CCTAGAAGTT GTCGGTTAAG ATTATGTAAC TGAACAATGG GCCTGGTCTG
  TAACTACTCC ACTTTACAAA GGGCCTGGTC CCCGCTGTCC AGGTGGTTGA GTATTGGGTC
  Y
  CGGTGGTCCG GTGTGCCAGG GTGCCGGATT GCTGCTGGCC ACCTGACACT CCGAGCCATA
  TGGTGCCTGT TAAATCCGGT GTCCGGGCCT GTAATTTGGG GGGCACGGAT GGAAGGAGTT
  AGGTTTATTA AAGGGTTTGT TCCAACCCCC TGGACTTGTG GTTCCATGTG ATATGGCATT
  AGAGATTCTG CGCGTCCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322394507	CHEV_7_117266729	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248121708					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109722422 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19571	CpG island 19571	within coordinates
Gm45819	predicted gene 45819	1475 bp downstream
Rr400541	regulatory region 400541	1142 bp downstream
Rr400542	regulatory region 400542	665 bp upstream
Rr653190	regulatory region 653190	1159 bp distal
Tssr68487	transcription start site region 68487	1080 bp downstream
Tssr68488	transcription start site region 68488	920 bp downstream
Tssr68489	transcription start site region 68489	892 bp downstream
Tssr68490	transcription start site region 68490	636 bp downstream
Tssr68491	transcription start site region 68491	437 bp downstream
Tssr74249	transcription start site region 74249	1622 bp upstream
Tssr74250	transcription start site region 74250	312 bp upstream
Tssr74251	transcription start site region 74251	271 bp upstream
Tssr74252	transcription start site region 74252	186 bp upstream
Wee1	WEE 1 homolog 1 (S. pombe)	Intron