rs248135878 SNP Detail

Summary

• ID
  rs248135878
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:80708174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATTTTAA AACTCAGCCG
  GATGCAATCG CTTCCGAGTC ATCCTCAGTC TCCAGTCGCC TTTGCCTGAG CCTGCGACCC
  TGGAACAAAG CACGCGCGGC TGGTGAGCAC TCAGGCCACC CTCGCCTCTA CTTGGGCGTA
  GCTTCAGGGA ACTGAGAATG CACCTAGCTT CTGTTCCCCG CCTTCCTCAT CCCTGCTCTG
  M
  CGGCGATCAG GTTGAGGTTT GTATCTGGTA GGCATCCCCA TCAACAGCCT CATCCCCCGC
  TGCCCGCATT CTCAGCCCTT CGGGGTCTCC ATTCTCTTAG CATCCCTTCC ATGCCCGCTC
  ACACAAGCCA GTCAGGGCCT GCGTCAGTCT CGTGCCCGCG CCCCTCGGGT GGGCATTATG
  TAACAGCCCC GGGCCCAACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358616697	MGP_WTSI_3_80604789	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248135878					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358616697	MGP_WTSI_3_80604789	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80708174 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13280	CpG island 13280			within coordinates
Cpgi13281	CpG island 13281			1643 bp proximal
Gm66511	predicted gene, 66511			within coordinates
Gria2	glutamate receptor, ionotropic, AMPA2 (alpha 2)			Intron
				Noncoding-Transcript-Variant
Rr578665	regulatory region 578665			608 bp distal
Rr578666	regulatory region 578666			1958 bp proximal
Tssr29615	transcription start site region 29615			335 bp downstream
Tssr29616	transcription start site region 29616			312 bp downstream
Tssr33765	transcription start site region 33765			1723 bp downstream
Tssr33766	transcription start site region 33766			1737 bp downstream
Tssr33767	transcription start site region 33767			1766 bp downstream
Tssr33768	transcription start site region 33768			1784 bp downstream
Tssr33769	transcription start site region 33769			1812 bp downstream
Tssr33770	transcription start site region 33770			1878 bp downstream
Tssr33771	transcription start site region 33771			1922 bp downstream