rs248137899 SNP Detail

Summary

• ID
  rs248137899
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142206393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTAAAAA GCGGGGGCTC
  CCCAGGAGAC TGACAAAGAT GGCCCATAGG TGTGCTCAGG GTAGGGGTTG TCCCCCAGAT
  CTTTCCTCCC AGGAGCACAA CTAGGGGTCA GGTTACTTGG GCAGCATGTA TCACTTGGCA
  GTGCCATCTC CTTATCTGGC CAAACTTATT CTACACTGGC TAGTCATTGG TCCTCATGGC
  K
  GGGGTGGTTG GGGAGCACCG GGCTCACCAT GTGGACAGGT GCTTAGATGG AATTGAGCCT
  TGCTAGAACA CCTCCCTCAC TGAGAAAGAC AGAACTAGCA GCCTGGTCAC ACATAGAGCC
  AATAAGCAGC AGCAGAAACT AGATGGATTG GGAGGAGAGC TCAAACCATG CAAACTGCTC
  AGGAAATTTG GGATGGGCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373454550	MGP_WTSI_7_149838561	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248137899					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373454550	MGP_WTSI_7_149838561	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142206393 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19966	CpG island 19966	1629 bp proximal
D7Mit46	DNA segment, Chr 7, Massachusetts Institute of Technology 46	257 bp proximal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Rr167001	regulatory region 167001	1007 bp proximal
Tssr2462	transcription start site region 2462	390 bp upstream
Tssr2463	transcription start site region 2463	1188 bp downstream
Tssr70229	transcription start site region 70229	288 bp upstream
Tssr70230	transcription start site region 70230	420 bp upstream
Tssr70231	transcription start site region 70231	897 bp upstream
Tssr70232	transcription start site region 70232	933 bp upstream
Tssr70233	transcription start site region 70233	983 bp upstream
Tssr70234	transcription start site region 70234	1009 bp upstream
Tssr70235	transcription start site region 70235	1045 bp upstream
Tssr70236	transcription start site region 70236	1077 bp upstream
Tssr70237	transcription start site region 70237	1173 bp upstream
Tssr70238	transcription start site region 70238	1192 bp upstream
Tssr70239	transcription start site region 70239	1336 bp upstream
Tssr70240	transcription start site region 70240	1657 bp upstream
Tssr75846	transcription start site region 75846	1844 bp upstream
Tssr75847	transcription start site region 75847	1565 bp upstream
Tssr75848	transcription start site region 75848	1531 bp upstream
Tssr75849	transcription start site region 75849	1311 bp upstream
Tssr75850	transcription start site region 75850	1265 bp upstream
Tssr75851	transcription start site region 75851	1252 bp upstream
Tssr75852	transcription start site region 75852	1062 bp upstream
Tssr75853	transcription start site region 75853	1021 bp upstream
Tssr75854	transcription start site region 75854	614 bp upstream
Tssr75855	transcription start site region 75855	430 bp upstream
Tssr75856	transcription start site region 75856	391 bp upstream
Tssr75857	transcription start site region 75857	376 bp upstream
Tssr75858	transcription start site region 75858	338 bp upstream
Tssr75859	transcription start site region 75859	282 bp upstream
Tssr75860	transcription start site region 75860	227 bp upstream
Tssr75861	transcription start site region 75861	195 bp upstream
Tssr75862	transcription start site region 75862	336 bp downstream
Tssr75863	transcription start site region 75863	355 bp downstream
Tssr75864	transcription start site region 75864	393 bp downstream
Tssr75865	transcription start site region 75865	416 bp downstream
Tssr75866	transcription start site region 75866	471 bp downstream
Tssr75867	transcription start site region 75867	514 bp downstream
Tssr75868	transcription start site region 75868	537 bp downstream
Tssr75869	transcription start site region 75869	547 bp downstream
Tssr75870	transcription start site region 75870	568 bp downstream
Tssr75871	transcription start site region 75871	609 bp downstream
Tssr75872	transcription start site region 75872	1010 bp downstream
Tssr75873	transcription start site region 75873	1032 bp downstream
Tssr75874	transcription start site region 75874	1241 bp downstream
Tssr75875	transcription start site region 75875	1278 bp downstream
Tssr75876	transcription start site region 75876	1310 bp downstream
Tssr75877	transcription start site region 75877	1386 bp downstream
Tssr75878	transcription start site region 75878	1662 bp downstream
Tssr75879	transcription start site region 75879	1684 bp downstream
Tssr75880	transcription start site region 75880	1734 bp downstream