rs248139033 SNP Detail

Summary

• ID
  rs248139033
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28946102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGCTGGG AGATGGCTCC
  ATCAGTAAGG AAGACCTGAC TTCAATCCTT GGACCCCACA TTAAAAAAAA AAAGAGCCCA
  AAGTAGATCT ATTCTTATAA TCTCAGAGCT AGGAATGTGG GGCTCATTGG TACCAGCCTA
  GCCTACTTGG TAAAGGGTCC TCTAACTCCC ACAAATATAG GTACACACAC ACACACACAC
  M
  CCCAAAGAAA CATCGGGAAC AGTGAGGTGG CTAAGCAGGT GAAGGGCGCT CGCTACCAAG
  CTCCTGCAGG CTGCGCTGAC GTGCATACCA GGGCTCAAGT AGATCCATCA CCAGGAACTC
  GAGGCCACCT TGGTCTACAT GTCAAGATCC TGCCTCCCAG AGAGAAAGAG CGCGGGAGGG
  GGAGAAGGAG GGGGAGGAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322127532	CHEV_7_30031696	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248139033					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28946102 () rs orientation: forward

Symbol	Name	Function Class
2200002D01Rik	RIKEN cDNA 2200002D01 gene	844 bp downstream
Cpgi18753	CpG island 18753	558 bp proximal
Gm73451	predicted gene, 73451	938 bp upstream
Tssr65617	transcription start site region 65617	927 bp downstream
Tssr65618	transcription start site region 65618	958 bp upstream
Tssr71635	transcription start site region 71635	445 bp downstream
Tssr71636	transcription start site region 71636	1049 bp downstream
Tssr71637	transcription start site region 71637	1249 bp downstream
Tssr71638	transcription start site region 71638	1267 bp downstream
Tssr71639	transcription start site region 71639	1698 bp downstream
Tssr71640	transcription start site region 71640	1780 bp downstream
Tssr71641	transcription start site region 71641	1834 bp downstream
Yif1b	Yip1 interacting factor homolog B (S. cerevisiae)	within coordinates