rs248143343 SNP Detail

Summary

• ID
  rs248143343
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129206721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATCTCATC TGTTCAAAAT
  TGCCAGACCT GAAGAAGGAG ATCTTCTCAT TTATTCATCT ATTTGCTGGG CTCATGTTGG
  ATGAGAAGGA CAGGGGCTGT CTGTCGGACT TTTTCCTCTT TAAGATTTGA ACTAGCTTTC
  AGCTTCCAGT TGATGGTCAA CTGGGATCCT TAGAGGAAAA GCTATAATTA TCTACAGTCC
  R
  CATGTATAGA GTGGTCCTAG GTGATCTGAC ATTAGCTGGC TAGTATGGCA GGCCTCAGTG
  AGAAAGCATT CAGTTTCCAC TGAAATTTGG CTGGACAGCT ATTGTGCGAT AAGCAGACTG
  TTAGGCAGAG GAAAAACAGT ATCAGAAAGA TAACACAACC TTTGTCTTTG TGCCCCTTGC
  TTTCAGAGTT CATTTTTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370046222	MGP_WTSI_6_129179776	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248143343					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370046222	MGP_WTSI_6_129179776	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129206721 () rs orientation: forward

Symbol	Name	Function Class
Gm38906	predicted gene, 38906	1995 bp downstream
Gm47861	predicted gene, 47861	within coordinates
Rr399972	regulatory region 399972	131 bp downstream
Tssr59119	transcription start site region 59119	375 bp downstream
Tssr59120	transcription start site region 59120	343 bp downstream
Tssr59121	transcription start site region 59121	744 bp upstream
Tssr59122	transcription start site region 59122	778 bp upstream
Tssr59123	transcription start site region 59123	837 bp upstream
Tssr63549	transcription start site region 63549	639 bp upstream
Tssr63550	transcription start site region 63550	513 bp upstream
Tssr63551	transcription start site region 63551	504 bp downstream