rs248159897 SNP Detail

Summary

• ID
  rs248159897
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28526737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAAA AAAAAAAAAA
  ATCCCCCTAG GGCTGGACTA ACAGGTTGGG TGTGATCAAT TTGACAGTGT TGGCTCACAA
  CCATCTGTAA TGAAATCTCA TGCCTTCTTC TGGTGCATCT GAAGACAGCT ACAGTGTACT
  TAGATATAAT AATAAATAAA TCTTTTTTAA AAAGTATATA GGTTCTTAAC TGTTGAGCTA
  Y
  GCCATTAGTC CTCAGTGGGT TTTTGTTTGG TTGGTTTTCT GAGACAGGGT TTCTCTGTGT
  AGCCTTGGCT ATCTCGGAAC TTGATCTGTA GACCAAGTTC AGGCTGGCCT GGAACACAGA
  GATCTGTCTG CCTCTGCCTC CTGGGCACTG GGATTTAACA GCTTGCACCA CCATGCCCAG
  CTTTTTTTTT TTTTCTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZO/HlLtJ	PL/J	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss370868035	MGP_WTSI_7_29612331	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZO/HlLtJ	PL/J	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs248159897					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370868035	MGP_WTSI_7_29612331	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28526737 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18723	CpG island 18723	1819 bp distal
Ech1	enoyl coenzyme A hydratase 1, peroxisomal	within coordinates
Rr155798	regulatory region 155798	137 bp distal
Rr167384	regulatory region 167384	736 bp distal
Rr380577	regulatory region 380577	1371 bp downstream
Tssr65549	transcription start site region 65549	1998 bp downstream
Tssr65550	transcription start site region 65550	1949 bp downstream
Tssr65551	transcription start site region 65551	210 bp upstream
Tssr65552	transcription start site region 65552	319 bp upstream