rs248167443 SNP Detail

Summary

• ID
  rs248167443
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83485588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGAGTCA GGAGTAGTGT
  TGCCAATTCA AGCCCTGCAG GTCAGCCTGG GACACAGTGT GAAGCCTTGC CTTAAAGAAG
  TTTATGGTTA TTGAGATGAA TTAAGCTGGA GAGACTGCTC AGCGGTTAAC AGCACGACTG
  CTCGCTCTCC CATAGGGCCG GAGTTCAATT GTCAGCAACC ATATGTTGGC TTACAACCAT
  Y
  TGTAATGGGA TCTGATGCCC TTTTCTAGTG TGTCTGAAGA AAGCTATTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTATACAC ACACACACAC ACACACACAC
  ACACACATGA CTCAGCATGG GACTAGAGAG ATGGCTTAGC CGGCTGTCCT TCTGCCTCAG
  CCTTCTCAGT AAAGGCAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369033014	MGP_WTSI_6_83458600	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	T	C	C	T	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248167443					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	T	C	C	T	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369033014	MGP_WTSI_6_83458600	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83485588 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17605	CpG island 17605	1220 bp distal
Dguok	deoxyguanosine kinase	1701 bp upstream
Rr399724	regulatory region 399724	1428 bp downstream
Rr632885	regulatory region 632885	1147 bp distal
Rr632886	regulatory region 632886	930 bp proximal
Rr632887	regulatory region 632887	1797 bp proximal
Tssr1908	transcription start site region 1908	1500 bp downstream
Tssr61664	transcription start site region 61664	1783 bp upstream
Tssr61665	transcription start site region 61665	1771 bp upstream
Tssr61666	transcription start site region 61666	1756 bp upstream
Tssr61667	transcription start site region 61667	1730 bp upstream
Tssr61668	transcription start site region 61668	1712 bp upstream
Tssr61669	transcription start site region 61669	1679 bp upstream