rs248167787 SNP Detail

Summary

• ID
  rs248167787
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:76302762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTTGTTC TCAAAAGTGT
  AGCTGCTGGC ATCATTCTGC CTAGACACGG GCTACCTGAG GAGTCCAACC TCAGAAACCC
  AGCATAGCCG CTTGTCTGGC AATTTGGTGG TGATTCGGTT GTGGCAAGAT TTGACACGGG
  TGATTGGTCA AATCAGAGAG AGGGTCTCTT TCTAATTTTT TGTTTGTTTG TTTTCTGACA
  M
  AGGGTCTCTC CACGGAGCCC TGGCTGTCCT GCAACTTACT CTGTAGACCA TGCTGATCTT
  GAACTCACAG AGATCCCCTC CTGCCTCTGC CTCCTGAGTG CTGGGATTAA TGGCTTGGGC
  TACCACACCT GGCCTAGAGG GTTTCCTCTA ATTCAGCGCA TTCCTCATTA CACCAAATGC
  TGTCTTTTTT TCTCTTTCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324104768	CHEV_12_77356975	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248167787					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76302762 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4777	CpG island 4777	321 bp distal
Gm47525	predicted gene, 47525	251 bp upstream
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	Intron
Rr403350	regulatory region 403350	642 bp downstream
Rr468112	regulatory region 468112	565 bp distal
Rr468113	regulatory region 468113	within coordinates
Tssr113934	transcription start site region 113934	749 bp downstream
Tssr113935	transcription start site region 113935	731 bp downstream
Tssr113936	transcription start site region 113936	681 bp downstream
Tssr113937	transcription start site region 113937	651 bp downstream
Tssr113938	transcription start site region 113938	619 bp downstream
Tssr113939	transcription start site region 113939	552 bp downstream
Tssr113940	transcription start site region 113940	516 bp downstream
Tssr113941	transcription start site region 113941	494 bp downstream
Tssr116711	transcription start site region 116711	931 bp upstream
Tssr116712	transcription start site region 116712	878 bp upstream