rs248173729 SNP Detail

Summary

• ID
  rs248173729
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:13725921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGAAAAAA AATGATGAGG
  AAAGATAAGG CAGAGACGCC TCTACCCAAC CTCACTCACT GCCACCATCC CCCTATGCAG
  TCAGAGGCAA TGAAGGCTCC AATCATACCC TTATTCAACG TCTAGCAACG GAGGAGGGAC
  CTTCTGACTT GTCCCCTCTG CTGCTCCCCT AGTGAAGACC CGATTCCGGC AGACAGACTG
  R
  AGTCTTTCCT TCCCTCCTGT CTTATTTACT ATGTCATTCT GGAAAAGAAA TCCTCTTTGT
  TTGAATGGAA CTAAAACCTT TCCCTGTGTG CACAGTAGCC GATGCTAGGA TTGAAGCAAG
  CACACTGTAC TGAAAGGGAA AGAAAGTCTT GGACCCTTCT CACCAACTGA CCTGATTCTG
  CCCCAGCAGT ATTCCACAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373753213	MGP_WTSI_8_13675921	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248173729					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373753213	MGP_WTSI_8_13675921	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13725921 () rs orientation: forward

Symbol	Name	Function Class
4930442M18Rik	RIKEN cDNA 4930442M18 gene	within coordinates
Cpgi20115	CpG island 20115	387 bp proximal
Cpgi20116	CpG island 20116	875 bp proximal
Rasa3	RAS p21 protein activator 3	Intron
Rr400766	regulatory region 400766	975 bp downstream
Rr659983	regulatory region 659983	1091 bp distal
Rr659984	regulatory region 659984	1117 bp proximal
Rr659985	regulatory region 659985	1598 bp proximal
Rr659986	regulatory region 659986	1672 bp proximal
Rr659987	regulatory region 659987	1782 bp proximal
Tssr76418	transcription start site region 76418	1395 bp downstream
Tssr76419	transcription start site region 76419	1854 bp upstream
Tssr80459	transcription start site region 80459	445 bp downstream
Tssr80460	transcription start site region 80460	1591 bp downstream
Tssr80461	transcription start site region 80461	1615 bp downstream
Tssr80462	transcription start site region 80462	1654 bp downstream