rs248174281 SNP Detail

Summary

• ID
  rs248174281
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154936442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCCTGTT AGTCTCTCCA
  TTCGAAAGAA ATGCAGGTCA GCTTCCAAAC ATTGACATCC TGCTTGGGCT AAAGAGATGG
  CACGTTTGTT GTCTTCCCCC CCTCCCCACT TTTTAGACAG AGACCCATGT ACCTCAGTTT
  GACCTTGAAT TTACTGTGTA GCTGAGAATG ACCTTGAACT TCGATCCTCC TCTCTCCACA
  Y
  CTCAGATGCT GGATTTACAG ACATATGCTA CCATGTCCAA TCTATACAGT ACTGGGGGGA
  CGGGGTGGGG GGAAATGTCA AATCCAAGGT GTCACATATG CTAGGCAAGC ACTCTACCTT
  GCCTGCCGCT CACTGCATCT TTAGCCCTGG GACTTACTTA CCTTGCCACC ATTTCTGACC
  ACTCCAACAG CACCCAGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352009633	MGP_WTSI_1_156907826	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248174281					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352009633	MGP_WTSI_1_156907826	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154936442 () rs orientation: forward

Symbol	Name	Function Class
Cpgi880	CpG island 880	809 bp distal
Gm41980	predicted gene, 41980	362 bp upstream
Gm51651	predicted gene, 51651	within coordinates
Gm70900	predicted gene, 70900	1104 bp upstream
Rr396410	regulatory region 396410	837 bp downstream
Tssr248	transcription start site region 248	1166 bp upstream
Tssr9521	transcription start site region 9521	986 bp downstream
Tssr9522	transcription start site region 9522	750 bp downstream
Tssr9523	transcription start site region 9523	1605 bp upstream
Tssr14331	transcription start site region 14331	1151 bp upstream
Tssr14332	transcription start site region 14332	1139 bp upstream
Tssr14333	transcription start site region 14333	1121 bp upstream