rs248181467 SNP Detail

Summary

• ID
  rs248181467
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:3893803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTATCTCA CTCCCTACCT
  GGCATACCCT GCCCCTAATC CTAAACTTTC CAGCCCAGGG GCTGGGCTGC CCTTCCTCTA
  GACGTTCCTT CTTATATAAT CTAGACATTT TGATGTGTGT CTCGCTCTGT CTCTTTCTCT
  GCCCCCTACA CACACACACA CCCCTTCCCA AGGCAACTTT CCTGGCCTTG GTCCTTGGGG
  Y
  CAGTGAACTC GAGAGAGCAG CTTCCCAATA GACCTGCCTT TACTATAATC TAATCTGGTT
  TATCTCACTG GCTGTGGAGA TATAACCTAT CAATTACAAA TGTCAGACCA TCTCCAATTT
  ACAGAAGACA CAGGTGAGAG CTAGTTACAT GGAGTGCCAC TTCCTGTCTG GCCTTCTAGT
  TGTATCCTAC CTTGACAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325088616	CHEV_16_4075939	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248181467					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3893803 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi7905	CpG island 7905			1415 bp proximal
Rr370033	regulatory region 370033			1786 bp upstream
Rr510762	regulatory region 510762			782 bp distal
Rr510763	regulatory region 510763			1878 bp proximal
Trap1	TNF receptor-associated protein 1			Intron
				Noncoding-Transcript-Variant
Tssr139752	transcription start site region 139752			1839 bp downstream