rs248210570 SNP Detail

Summary

• ID
  rs248210570
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135389870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCCTGAAA ATCTACTCAG AGCCTGGAGT
  GGCCCTGGCC TCTTCACTCA TTTCTACATG CACATCTCCC CCTCTGAGGG ACTGGCCTTG
  CCTCTCTCTT CTTTCCTACG TCTCTTTTCC TCCATGGCAC CTTGCTCTGA GGCCAACCTC
  R
  GGTTAGGGTG CCTGTAGGAC TCTAGGCCAA GTGGTCCTTT TGTAGAGGCA ATACAGTGAT
  CAGGGCCGCT TCCTGGCCAA GTGTGTCATC GTCAGCAGCT TGGCTGCACC ATCCAACACG
  GTGTAAGATT GGTTCAACAT CAGGGATCCC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319990150	CHEV_1_137358709	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248210570					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135389870 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nav1	neuron navigator 1			Intron
				Noncoding-Transcript-Variant
Rr419148	regulatory region 419148			1407 bp distal
Rr419149	regulatory region 419149			398 bp distal
Rr419150	regulatory region 419150			768 bp distal
Rr419151	regulatory region 419151			215 bp proximal