rs248215707 SNP Detail

Summary

• ID
  rs248215707
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51370441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCGGATACC AGTATGGGCA
  CAAAAAGAAG GCTAGTAAGT AGAGCATGAG TGCCTTGCAT GTCTGGAGGT GTTGGGCAGA
  GAAAACATGT AGTCTCAAGA CATGTATAAA TTTCAGAGAT ATTGCAATAT TTCCCATCTC
  CTAGAGTATT AGTATAGTCA TAGGAAGGAA TTTAACAGTC CCTTTCTTCC TCTTAAAGTT
  Y
  CTATTGTTGG AGCTTTCCCA TCCTCCTAGC AGATGCTTTT TCAATTCATG CAGCTCAAAG
  AGAGGCCAAC TTACAAGTGC TTTCAACAGC ACCAGACCCA ACACACAGAG ATAGACACCA
  CCAGGAGAAA TAATTCTTGC CATAGACCTT ACTTCCACCT GATTGTCCCT GTCTTCACAG
  CTCTAGCCTA GAGGCTACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380379858	MGP_WTSI_10_51214151	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248215707					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380379858	MGP_WTSI_10_51214151	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51370441 () rs orientation: forward

Symbol	Name	Function Class
Gm40645	predicted gene, 40645	within coordinates
Gm49339	predicted gene, 49339	within coordinates
Lilrb4a	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	within coordinates
Tssr93270	transcription start site region 93270	1604 bp downstream
Tssr93271	transcription start site region 93271	1486 bp downstream
Tssr93272	transcription start site region 93272	1431 bp downstream
Tssr93273	transcription start site region 93273	1160 bp downstream
Tssr93274	transcription start site region 93274	627 bp downstream
Tssr93275	transcription start site region 93275	494 bp downstream
Tssr93276	transcription start site region 93276	440 bp downstream
Tssr93277	transcription start site region 93277	392 bp downstream
Tssr93278	transcription start site region 93278	356 bp downstream
Tssr93279	transcription start site region 93279	200 bp downstream
Tssr93280	transcription start site region 93280	236 bp upstream
Tssr93281	transcription start site region 93281	276 bp upstream
Tssr93282	transcription start site region 93282	300 bp upstream
Tssr93283	transcription start site region 93283	377 bp upstream
Tssr93284	transcription start site region 93284	711 bp upstream
Tssr93285	transcription start site region 93285	936 bp upstream
Tssr93286	transcription start site region 93286	1050 bp upstream
Tssr93287	transcription start site region 93287	1412 bp upstream
Tssr93288	transcription start site region 93288	1672 bp upstream
Tssr93289	transcription start site region 93289	1740 bp upstream
Tssr97556	transcription start site region 97556	124 bp downstream
Tssr97557	transcription start site region 97557	489 bp downstream
Tssr97558	transcription start site region 97558	1676 bp downstream