rs248234339 SNP Detail

Summary

• ID
  rs248234339
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135106548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGCTAAG TTATATAACT
  TAAGTACCAT GGAACGTTCT TGACATAAAG TTCACAAAGT GGTGTTCTAT TAGTAGCCCA
  GGCTGGCCCT AAACTCCAGG TCTTCCTGCC TAAGCCTCCT TTGTGCTGGG ATTACAAGTC
  AATGGCTTTA TACCCAGTCA ATGCCATAAT CTCTCTCTCA TCTCCCTCTC CCCCTCCCCC
  Y
  CTCCCCCTCT CCCCCTCCCT CTCCAGCTCT CCTCCCCTCC CTCCTTCCCT CCCTCCTCTT
  CTCTCCTCTC TTCCAACATT ACCCCTGTTT CATCTCCCCA ACCATACCAA GAGCGCTGCT
  TGAACGCTCT GCACCTCAGT GTTTGTTCCC CCGATGCCCC TGACAGATAG GAGCCCAGAG
  AACTCTCTGT AGGCTAGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CE/J	CZECHII/EiJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	RIIIS/J	SEA/GnJ	ST/bJ	ZALENDE/EiJ
ss351535242	MGP_WTSI_1_137075387	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CE/J	CZECHII/EiJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	RIIIS/J	SEA/GnJ	ST/bJ	ZALENDE/EiJ
rs248234339					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351535242	MGP_WTSI_1_137075387	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135106548 () rs orientation: forward

Symbol	Name	Function Class
Rr419094	regulatory region 419094	59 bp proximal
Rr419095	regulatory region 419095	1852 bp proximal