rs248235261 SNP Detail

Summary

• ID
  rs248235261
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75477301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCATGCATC TCATAGCACT CCTGAAACCC
  CTGGATGCCC TCCCCTGGCC TGCAGCCCAC ACTATCATCA GCCACGGAGG AACCTATTCC
  TTCCTAGCTC TTCAGCCTCC AGACTCAATG TTCCCGTTAC GTTACTTCTG CTAGTCCGGA
  R
  CTCCTCAGTT gtttcatcag ctttacgtga gctggggtca tctgtgaaga gggaacctca
  gttgagaaaa ccttcccatc agatttgcct ttaggtaagc ctgtggggcc ttttttagat
  taacggttgc tatgggaggg ctcagttcac                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323751089	CHEV_11_75399977	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248235261					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75477301 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3269	CpG island 3269	1353 bp proximal
Gm53686	predicted gene, 53686	1884 bp upstream
Pitpna	phosphatidylinositol transfer protein, alpha	1622 bp upstream
Rr402732	regulatory region 402732	1433 bp upstream
Rr451215	regulatory region 451215	1132 bp proximal
Rr451216	regulatory region 451216	1633 bp proximal
Tssr102991	transcription start site region 102991	1589 bp upstream
Tssr102992	transcription start site region 102992	1678 bp upstream