rs248238950 SNP Detail

Summary

• ID
  rs248238950
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24021772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATCGTATA CTACATATGC
  TTCAGAAAAT CCTCATTCCC CAAGGCCCAG ACTTCTCAAA TTATTAACCT CAATGACACA
  TCCAACAGCT CCAGTCAGGA GCTTCAGTCA GGGCTTCCCA TTATGGAGAA GTGGTTTGTC
  CTCTTACAGC ACTTAGAGTC AAACACAAAA CCAAAGGAGA TGCATTGAGA GCATAAAGCA
  R
  GACAGGACTT AAAGCCACAG TGAAGATGAG CTACCAGAAG AGCTCAGTGC ACACAGAACC
  CAGATTCCTT TCTGTGAATG AGTTTGACAT CAGTGCTCAG GCTGAGTCAT AAGCCTAGGG
  GCCTCTGAGA GGTAGAGTTT TTTTGTTTTT TGTTTGTTTG TTTGTTTGTT TTTTGCCTAT
  ACGAAACAGT GGGTTTGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324292290	CHEV_13_23929658	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248238950					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24021772 () rs orientation: forward

Symbol	Name	Function Class
Gm56568	predicted gene, 56568	within coordinates
Rr475959	regulatory region 475959	875 bp distal
Rr475960	regulatory region 475960	1649 bp proximal
Rr475961	regulatory region 475961	1732 bp proximal
Slc17a3	solute carrier family 17 (sodium phosphate), member 3	1645 bp upstream
Tssr4011	transcription start site region 4011	1836 bp upstream
Tssr4012	transcription start site region 4012	1934 bp upstream
Tssr118873	transcription start site region 118873	879 bp downstream
Tssr118874	transcription start site region 118874	828 bp downstream
Tssr118875	transcription start site region 118875	1612 bp upstream
Tssr118876	transcription start site region 118876	1656 bp upstream
Tssr118877	transcription start site region 118877	1788 bp upstream
Tssr118878	transcription start site region 118878	1809 bp upstream