rs248240938 SNP Detail

Summary

• ID
  rs248240938
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:120881505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGGCCCCA CCCCCAGCCT
  GCTGCCCTCC CCTGCCCCGC TCTCCCCTCC CCCTCCCCGC TGTCCCCCCC CGGCCCCCGC
  CCCCAGTCCT TTTCCCACGC CCTCTGACAC CCCACCACCG AGGCCCGCTG GCCCCCGCCT
  CTAGGCCTCC TTCTTCCTCT CCCGGGTCCC CGACCATCCC CAGACACGCT CCGAGCTCTG
  Y
  CCCCCGGCCT GCAGTCCCCA AGACCGGCCT GTCCTTCCAG CCCTTCCCCG CACCCCACCC
  CGACCCGCCG CGCCGCGCCC AGCCCCCCGG CCGCGCTCGC ACAGCGGCCG TTGGTGTCTG
  GCCGAGGCCG GTGCCCGGGC CCTCGGCTGC GGGGATGCCG AACGTCCACT CCGGCCCTCC
  GCAGGCCTCG GCCTGCCGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss384952591	MGP_WTSI_11_120851993	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs248240938					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384952591	MGP_WTSI_11_120851993	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:120881505 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4335	CpG island 4335	within coordinates
Csnk1d	casein kinase 1, delta	within coordinates
Gm53204	predicted gene, 53204	764 bp upstream
Gm57327	predicted gene, 57327	496 bp upstream
Rr403207	regulatory region 403207	520 bp upstream
Rr461862	regulatory region 461862	1787 bp distal
Rr461863	regulatory region 461863	1468 bp distal
Rr461864	regulatory region 461864	within coordinates
Rr461865	regulatory region 461865	228 bp proximal
Rr461866	regulatory region 461866	380 bp proximal
Rr461867	regulatory region 461867	403 bp proximal
Rr461868	regulatory region 461868	507 bp proximal
Rr461869	regulatory region 461869	641 bp proximal
Rr461870	regulatory region 461870	756 bp proximal
Rr461871	regulatory region 461871	1929 bp proximal
Tssr106388	transcription start site region 106388	104 bp downstream
Tssr106389	transcription start site region 106389	703 bp upstream
Tssr106390	transcription start site region 106390	733 bp upstream
Tssr112430	transcription start site region 112430	341 bp downstream
Tssr112431	transcription start site region 112431	360 bp downstream
Tssr112432	transcription start site region 112432	399 bp downstream
Tssr112433	transcription start site region 112433	424 bp downstream
Tssr112434	transcription start site region 112434	581 bp downstream
Tssr112435	transcription start site region 112435	626 bp downstream