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rs248254944 SNP Detail
Summary
  • ID
    rs248254944
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr7:19429909 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGCTCACAAC CATCTGTAAT
GGGACCTGAC GCCTGAAGAC AGCTGCAGTG TACCTTATAC ATAAGATAAA CAAATCTTAA
ATAAATAAAT AAATAAAATG AGCCCATGCC TAGAATCCAG GGGTAGGGGG CGGTGAAGAG
CCCCAGAGGC TGTGGGTGTG GCTCAGTGGT AGAGCTACTG ACTAGAATTC CCGTAGTGAG
S
GGCTGGAGGG GCGTGACTCA GTGGTAGATA TGATTCCCCA GTGAGGGGCT GCGGGTGGCT
CAGTGGTAGA GCCCCTGCCT AGAATCCCCC AGTGAGGGGC TGTGGGCGTG GCTCAGTGGT
AGATCACTTG TTCTTTTATG TTGCTAGGTC CTAGGCTTCA TTTCTATTGC TGCAAAACCA
CCTCCCTCTA CAGATAGTGA                                            

S = C/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss370754788 MGP_WTSI_7_20281333 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs248254944 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss370754788 MGP_WTSI_7_20281333 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:19429909 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apoe apolipoprotein E 125 bp downstream
Cpgi18507 CpG island 18507 537 bp proximal
D7Mit57 DNA segment, Chr 7, Massachusetts Institute of Technology 57 1787 bp proximal
Gm71725 predicted gene, 71725 1134 bp upstream
Rr155346 regulatory region 155346 92 bp proximal
Rr167194 regulatory region 167194 491 bp proximal
Tssr2112 transcription start site region 2112 467 bp upstream
Tssr2113 transcription start site region 2113 492 bp upstream
Tssr2114 transcription start site region 2114 607 bp upstream
Tssr2115 transcription start site region 2115 643 bp upstream
Tssr2116 transcription start site region 2116 718 bp upstream
Tssr2117 transcription start site region 2117 740 bp upstream
Tssr2118 transcription start site region 2118 847 bp upstream
Tssr2119 transcription start site region 2119 856 bp downstream
Tssr2120 transcription start site region 2120 919 bp upstream
Tssr2121 transcription start site region 2121 951 bp upstream
Tssr2122 transcription start site region 2122 1671 bp downstream
Tssr64880 transcription start site region 64880 284 bp upstream
Tssr64881 transcription start site region 64881 336 bp upstream
Tssr64882 transcription start site region 64882 380 bp upstream
Tssr64883 transcription start site region 64883 418 bp upstream
Tssr64884 transcription start site region 64884 445 bp upstream
Tssr64885 transcription start site region 64885 524 bp upstream
Tssr64886 transcription start site region 64886 545 bp upstream
Tssr64887 transcription start site region 64887 577 bp upstream
Tssr64888 transcription start site region 64888 796 bp upstream
Tssr64889 transcription start site region 64889 890 bp upstream
Tssr64890 transcription start site region 64890 936 bp upstream
Tssr64891 transcription start site region 64891 959 bp upstream
Tssr64892 transcription start site region 64892 992 bp upstream
Tssr64893 transcription start site region 64893 1027 bp upstream
Tssr64894 transcription start site region 64894 1481 bp upstream
Tssr64895 transcription start site region 64895 1577 bp upstream
Tssr64896 transcription start site region 64896 1603 bp upstream
Tssr70973 transcription start site region 70973 308 bp downstream
Tssr70974 transcription start site region 70974 354 bp downstream
Tssr70975 transcription start site region 70975 382 bp downstream
Tssr70976 transcription start site region 70976 417 bp downstream
Tssr70977 transcription start site region 70977 465 bp downstream
Tssr70978 transcription start site region 70978 480 bp downstream
Tssr70979 transcription start site region 70979 504 bp downstream
Tssr70980 transcription start site region 70980 514 bp downstream
Tssr70981 transcription start site region 70981 535 bp downstream
Tssr70982 transcription start site region 70982 549 bp downstream
Tssr70983 transcription start site region 70983 582 bp downstream
Tssr70984 transcription start site region 70984 599 bp downstream
Tssr70985 transcription start site region 70985 664 bp downstream
Tssr70986 transcription start site region 70986 697 bp downstream
Tssr70987 transcription start site region 70987 727 bp downstream
Tssr70988 transcription start site region 70988 771 bp downstream
Tssr70989 transcription start site region 70989 810 bp downstream
Tssr70990 transcription start site region 70990 822 bp downstream
Tssr70991 transcription start site region 70991 867 bp downstream
Tssr70992 transcription start site region 70992 875 bp downstream
Tssr70993 transcription start site region 70993 884 bp downstream
Tssr70994 transcription start site region 70994 925 bp downstream
Tssr70995 transcription start site region 70995 930 bp downstream
Tssr70996 transcription start site region 70996 963 bp downstream
Tssr70997 transcription start site region 70997 997 bp downstream
Tssr70998 transcription start site region 70998 1059 bp downstream
Tssr70999 transcription start site region 70999 1077 bp downstream
Tssr71000 transcription start site region 71000 1520 bp downstream
Tssr71001 transcription start site region 71001 1550 bp downstream
Tssr71002 transcription start site region 71002 1610 bp downstream
Tssr71003 transcription start site region 71003 1628 bp downstream
Tssr71004 transcription start site region 71004 1656 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory